setting up git-svn bridge

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/cummeRbund@96399 bc3139a8-67e5-0310-9ffc-ced21a209358

.Rapp.history

@@ -0,0 +1,10 @@
+foo = function(x){#
+#
+	x^2#
+#
+}#
+#
+y=2#
+#
+foo(y)
+setwd("/Users/loyalgoff/repos/cummeRbund")

.Rbuildignore

@@ -1,2 +1,3 @@
 .svn
 .Rhistory
+.RData

.gitignore

@@ -0,0 +1,5 @@
+cuffData.db
+.RData
+.Rhistory
+.DS*
+.Rapp.history

DESCRIPTION

@@ -1,23 +1,25 @@
 Package: cummeRbund
-Title: Analysis, exploration, manipulation, and visualization of
-        Cufflinks high-throughput sequencing data.
-Version: 2.9.0
+Title: Analysis, exploration, manipulation, and visualization of Cufflinks high-throughput sequencing data.
+Version: 2.9.1
 Date: 2013-04-22
 Author: L. Goff, C. Trapnell, D. Kelley
 Description: Allows for persistent storage, access, exploration, and manipulation of Cufflinks high-throughput sequencing data.  In addition, provides numerous plotting functions for commonly used visualizations.
 Imports: methods, plyr, BiocGenerics, Biobase
-Depends: R (>= 2.7.0), BiocGenerics (>= 0.3.2), RSQLite, ggplot2,
-        reshape2, fastcluster, rtracklayer, Gviz
-Suggests: cluster, plyr, NMFN, stringr, GenomicFeatures, GenomicRanges,
-        rjson
+Depends: R (>= 2.7.0), BiocGenerics (>= 0.3.2), RSQLite, ggplot2, reshape2, fastcluster, rtracklayer, Gviz
+Suggests: cluster, plyr, NMFN, stringr, GenomicFeatures, GenomicRanges, rjson
 Maintainer: Loyal A. Goff <[email protected]>
 License: Artistic-2.0
-Collate: AllGenerics.R AllClasses.R database-setup.R methods-CuffSet.R
-        methods-CuffData.R methods-CuffDist.R methods-CuffGeneSet.R
-        methods-CuffFeatureSet.R methods-CuffGene.R
-        methods-CuffFeature.R tools.R
+Collate: 	AllGenerics.R 
+			AllClasses.R 
+			database-setup.R
+			methods-CuffSet.R
+			methods-CuffData.R
+			methods-CuffDist.R
+			methods-CuffGeneSet.R
+			methods-CuffFeatureSet.R
+			methods-CuffGene.R
+			methods-CuffFeature.R
+			tools.R
 LazyLoad: yes
-biocViews: Sequencing, RNASeq, GeneExpression, DifferentialExpression,
-        Infrastructure, DataImport, DataRepresentation, Visualization,
-        Clustering, MultipleComparison, QualityControl
-Packaged: 2014-05-07 18:47:53 UTC; lgoff
+biocViews: HighThroughputSequencing, HighThroughputSequencingData, RNAseq, RNAseqData, GeneExpression, DifferentialExpression, Infrastructure, DataImport, DataRepresentation, Visualization, Bioinformatics, Clustering, MultipleComparisons, QualityControl
+