Code

Execution hooks (core features)#508

Code

Merged

bdice merged 157 commits intomasterglotzerlab/signac-flow:masterfrom feature/hooks-coreglotzerlab/signac-flow:feature/hooks-coreCopy head branch name to clipboardDec 29, 2021

+628-4

Commits

Commits on Dec 6, 2019

• Prototype implementation for execution hooks.

  Show description for d1c9158
  csadorf

  committed
  d1c9158

• Fix issue that occurs when the add_operation 'hooks' argument is None.

  csadorf

  committed
  75fa4e5

• Properly handle exceptions for on_start hooks.

  csadorf

  committed
  fb61dd4

• Reduce verbosity of hook module on errors.

  csadorf

  committed
  a3942ce

• Implement unit tests for run execution hooks.

  csadorf

  committed
  4a8192f

• Revised hooks implementation and provide basic hook modules.

  csadorf

  committed
  6caf1c0

• Fix docstrings in snapshots module (typo/style).

  csadorf

  committed
  e066d45

• Add option to exclude files/directories based on regular expression.

  Show description for 3ca7655
  csadorf

  committed
  3ca7655

• Rename the 'track-operations' executable to 'flow-track-operations'.

  csadorf

  committed
  6b55bca

• Add fork execution directive.

  csadorf

  committed
  c1b4f3d

• Remove fork execution directive.

  csadorf

  committed
  652ed87

• Fix rebase error.

  csadorf

  committed
  4232c06

• Install hooks through config as callable.

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  csadorf

  committed
  201b7f1

• Use hidden files for the operations log and tracking log.

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  csadorf

  committed
  130e85d

• Rename '_metadata_schema_version' to '_schema_version'.

  csadorf

  committed
  b03d211

• Remove left-over print statement.

  csadorf

  committed
  460e1e7

• Use git-notes for automated git-tracking.

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  csadorf

  committed
  03fd426

• Fix style error.

  csadorf

  committed
  ca207d9

• Revert changes to base submission script.

  csadorf

  committed
  5602701

• Update changelog.

  csadorf

  committed
  4f21e6a

Commits on Dec 15, 2019

• Remove obselete internal function.

  csadorf

  committed
  6c93fdc

• Update metadata schema.

  csadorf

  committed
  f05d45e

• Remove print_function from __future__ import.

  Show description for 6d8afef
  csadorf

  committed
  6d8afef

• fixup! Update metadata schema.

  csadorf

  committed
  556446e

• Rename '.snapshots' directory to '.signac_snapshots'.

  csadorf

  committed
  28f621a

• Refactor git repot initialization and git-ignore handling.

  Show description for 860abd6
  csadorf

  committed
  860abd6

Commits on Dec 17, 2019

• Use improved storage layout for snapshot system.

  csadorf

  committed
  074cb5b

Commits on Feb 11, 2020

• changes I failed to commit at the time

  csadorf

  committed
  05e0a81

Commits on Mar 1, 2020

• Merge branch 'master' into execution-hooks

  csadorf

  committed
  20dcb32

• Fix issue with test_context unit test.

  csadorf

  committed
  40169c8

• Fix error message.

  csadorf

  committed
  cf19cb9

Commits on Mar 5, 2021

• Merged master.

  klywang

  committed
  3a55d5b

• Fixed some errors made during merge conflict resolution.

  klywang

  committed
  2b3b0ec

Commits on Mar 7, 2021

• Merge pull request #475 from glotzerlab/execution-hooks-merged-try-3

  Show description for d0a15bc
  vyasr

  authored
  d0a15bc

Commits on Mar 12, 2021

• Style changes from pre-commit

  cbkerr

  committed
  1ec837c

• remove a temp todo comment

  cbkerr

  committed
  2e3a15a

Commits on Mar 18, 2021

• Merge branch 'master' into execution-hooks

  klywang

  committed
  0f4cadb

• Use more descriptive name _hook_triggers

  cbkerr

  committed
  87bd081

• pre commit formatting

  cbkerr

  committed
  dc3bcdb

Commits on Apr 8, 2021

• Merge branch 'master' into execution-hooks

  klywang

  committed
  eb8317f

Commits on Apr 13, 2021

• Merge branch 'master' into execution-hooks

  klywang

  committed
  97294f3

Commits on Apr 15, 2021

• Merge branch 'master' into execution-hooks

  klywang

  committed
  993c2bb

Commits on Apr 30, 2021

• Merge branch 'master' into execution-hooks

  klywang

  committed
  3ce929c

• [pre-commit.ci] auto fixes from pre-commit.com hooks

  Show description for 9b9bd6e
  pre-commit-ci[bot]

  committed
  9b9bd6e

• fix typo in docstring link

  cbkerr

  committed
  0fadaa7

• Remove flow-track-operations.

  bdice

  authored
  1d31725

• Remove non-core hook features.

  bdice

  committed
  f350702

• Update changelog.

  bdice

  committed
  079d58b

• Use explicit keyword names.

  bdice

  committed
  2daa4c7

• Remove from_dict constructor, fix user API to use (name, *jobs) instead of_JobOperation, fix test class name.

  bdice

  committed
  b6f6a34

• Rename class to _InstallHook.

  bdice

  committed
  a987130

• Fix comment.

  bdice

  committed
  8563853

• Remove _install_config_hooks.

  bdice

  committed
  5cf373c

• Revert changes to logging configuration. Not needed until the LogOperations hook is introduced.

  bdice

  committed
  766253b

Commits on May 9, 2021

• Merge branch 'master' into feature/hooks-core

  klywang

  committed
  2aa96df

Commits on May 17, 2021

• Merge remote-tracking branch 'origin/master' into feature/hooks-core

  bdice

  committed
  2e35fd1

Commits on May 20, 2021

• Merge remote-tracking branch 'origin/master' into feature/hooks-core

  bdice

  committed
  4adab1b

Commits on May 21, 2021

• Merge branch 'master' into feature/hooks-core

  klywang

  committed
  b763a5a

Commits on Jun 2, 2021

• Merge branch 'master' into feature/hooks-core

  klywang

  committed
  42dd5ae

Commits on Aug 2, 2021

• Merge branch 'master' into feature/hooks-core

  klywang

  committed
  ca179c9

Commits on Aug 3, 2021

• Merge branch 'master' into feature/hooks-core

  klywang

  committed
  41ce973

• Merge branch 'feature/hooks-core' of https://github.com/glotzerlab/signac-flow into feature/hooks-core

  klywang

  committed
  948eb56

Commits on Aug 5, 2021

• Added base hooks test, no error.

  klywang

  committed
  d9e5895

• Used a function get get values from dictionary instead of typing the whole thing out. Need to figure out how to run with error and still trigger hook.

  klywang

  committed
  52f8ed5

• Added test for when hook.on_fail is triggered plus changes to test to make it compatible with this test.

  klywang

  committed
  9040b76

• Added base tests for a cmd function.

  klywang

  committed
  0bc20a5

• Less clutter and neater in define_hooks_test_project.

  klywang

  committed
  b6f8ab1

Commits on Aug 9, 2021

• Added hooks install.

  klywang

  committed
  3e5b11b

• Removed test length of hooks.

  klywang

  committed
  3ce9fe0

• Added cmd tests.

  klywang

  committed
  f22c804

• Added test install test for cmd functions.

  klywang

  committed
  6ea4163

• Merge branch 'master' into feature/hooks-core

  klywang

  committed
  39360a8

• Ignore fail test when exception not raised.

  klywang

  committed
  ac7906e

• [pre-commit.ci] auto fixes from pre-commit.com hooks

  Show description for 80380f8
  pre-commit-ci[bot]

  committed
  80380f8

Commits on Aug 12, 2021

• Add docstrings to Hooks class.

  klywang

  committed
  686bda8

• Merge branch 'master' into feature/hooks-core

  klywang

  committed
  6e52a68

Commits on Aug 15, 2021

• Merge branch 'master' into feature/hooks-core

  klywang

  committed
  bd16433

Commits on Aug 16, 2021

• flake8 errors.

  klywang

  committed
  0b0af9b

Commits on Aug 20, 2021

• Merge branch 'master' into feature/hooks-core

  klywang

  committed
  f7dfed6

Commits on Aug 24, 2021

• Merge branch 'master' into feature/hooks-core

  klywang

  committed
  db82d4c

• Flake8 formatting.

  klywang

  committed
  182cf03

Commits on Aug 26, 2021

• Update flow/hooks/__init__.py

  Show description for 7606c16
  

  klywang

  and

  bdice

  authored
  7606c16

• Moved to changelog for 0.17

  klywang

  committed
  527d921

• Reference class in docs

  Show description for 9f4ecef
  

  klywang

  and

  bdice

  authored
  9f4ecef

• Merge branch 'feature/hooks-core' of https://github.com/glotzerlab/signac-flow into feature/hooks-core

  klywang

  committed
  04b8ef6

• Consistent language in the docstring

  Show description for fa5ef90
  

  klywang

  and

  bdice

  authored
  fa5ef90

• Input is operation, not operation_name

  Show description for ffaf05f
  

  klywang

  and

  bdice

  authored
  ffaf05f

• Language/wording

  Show description for 237f22e
  

  klywang

  and

  bdice

  authored
  237f22e

• Missing parenthesis

  Show description for 29b781b
  

  klywang

  and

  bdice

  authored
  29b781b

• More accurate description of parameters

  Show description for 443c064
  

  klywang

  and

  bdice

  authored
  443c064

• Grammar

  Show description for e8dca0f
  

  klywang

  and

  bdice

  authored
  e8dca0f

• Directly return the function

  Show description for 077981b
  

  klywang

  and

  bdice

  authored
  077981b

• Remove unneeded list

  Show description for d3d19b8
  

  klywang

  and

  bdice

  authored
  d3d19b8

• Return function directly instead of lambda function

  Show description for 91dbf1d
  

  klywang

  and

  bdice

  authored
  91dbf1d

• Fix typo (on_failure to on_fail)

  Show description for e404155
  

  klywang

  and

  bdice

  authored
  e404155

• Merge branch 'feature/hooks-core' of https://github.com/glotzerlab/signac-flow into feature/hooks-core

  klywang

  committed
  9290156

• Change documentation wording to be more user friendly

  Show description for d3b356f
  

  klywang

  and

  bdice

  authored
  d3b356f

Commits on Aug 27, 2021

• Swap order so variable can be used

  Show description for 0a4f9cf
  

  klywang

  and

  bdice

  authored
  0a4f9cf

• Use raise instead of raise error for more readable outputs

  Show description for 7ea174f
  

  klywang

  and

  bdice

  authored
  7ea174f

• Various edits to code.

  klywang

  committed
  cbc107f

• Added tests for invalid hooks.

  klywang

  committed
  c6a0c39

• set_job_doc_with_error needed an argument.

  klywang

  committed
  9727566

Commits on Aug 30, 2021

• Merge branch 'feature/hooks-core' of https://github.com/glotzerlab/signac-flow into feature/hooks-core

  klywang

  committed
  5731d47

• Rename for clairty.

  klywang

  committed
  40ca4d0

• Renamed for clarity and accuracy.

  klywang

  committed
  e8d2995

• Important distinction in docs

  Show description for db2ada9
  

  klywang

  and

  csadorf

  authored
  db2ada9

• Merge branch 'feature/hooks-core' of https://github.com/glotzerlab/signac-flow into feature/hooks-core

  klywang

  committed
  87acacb

• More important distinctions in docs.

  Show description for cd21900
  

  klywang

  and

  csadorf

  authored
  cd21900

• Correct version number in changelog.

  klywang

  committed
  9928584

• Merge branch 'feature/hooks-core' of https://github.com/glotzerlab/signac-flow into feature/hooks-core

  klywang

  committed
  13c63c9

• Renamed _HooksDecorator and added more descriptive docstring.

  klywang

  committed
  fcab466

• Remove unnecessary __call__.

  klywang

  committed
  8af01ad

• More changes for clarity on tests.

  klywang

  committed
  87101c3

• Corrected docstring for accuracy.

  klywang

  committed
  f087140

Commits on Sep 1, 2021

• Edited string for clarity.

  klywang

  committed
  ad3e184

• Fixed typo in test.

  klywang

  committed
  0adaf64

• Check for invalid hook attributes before instantiating the project.

  klywang

  committed
  9649d18

• Added test for exceptions in hook.

  klywang

  committed
  f8ac6ee

• Make tests more readable.

  klywang

  committed
  7c93f39

• Fixed typo in registry.

  klywang

  committed
  70e3659

• Only test one thing at a time.

  klywang

  committed
  7d482b6

• Only test one thing at a time.

  klywang

  committed
  314aa06

Commits on Sep 3, 2021

• Merge branch 'master' into feature/hooks-core

  klywang

  committed
  7dfcd0a

Commits on Sep 14, 2021

• Moved _HookRegistry to class method.

  klywang

  committed
  8e7beff

• Moved Hooks and _HooksList class out of __init__ file.

  klywang

  committed
  a981d31

• Added message to describe why.

  klywang

  committed
  2be393f

• Changed from hook to add_hook for clarity.

  klywang

  committed
  f7cf2c6

• Removed unneeded changelong subheadings.

  klywang

  committed
  788febf

• Raise error with message.

  klywang

  committed
  b3838c8

• Renamed from HooksRegistry to HooksRegister because naming consistency with OperationRegister.

  klywang

  committed
  ef1b596

Commits on Sep 15, 2021

• Import hooks without flake8 error

  Show description for fcf1657
  

  klywang

  and

  csadorf

  authored
  fcf1657

• [pre-commit.ci] auto fixes from pre-commit.com hooks

  Show description for 627a648
  pre-commit-ci[bot]

  committed
  627a648

Commits on Sep 17, 2021

• Removed unneccessary assert lines.

  klywang

  committed
  11eb205

• Merge branch 'feature/hooks-core' of https://github.com/glotzerlab/signac-flow into feature/hooks-core

  klywang

  committed
  504b3b2

• Better docs

  Show description for d9c7446
  

  klywang

  and

  b-butler

  authored
  d9c7446

Commits on Sep 24, 2021

• Used more explicit naming for project vs operation hooks.

  klywang

  committed
  f6ea7ec

• Merge branch 'master' into feature/hooks-core

  klywang

  committed
  ca7219b

Commits on Nov 8, 2021

• Merge branch 'master' into feature/hooks-core

  klywang

  committed
  a93cd2e

• Apply suggestions from code review

  Show description for d06a5ea
  

  klywang

  and

  bdice

  authored
  d06a5ea

Commits on Nov 17, 2021

• Merge branch 'master' into feature/hooks-core

  bdice

  authored
  9e09c6a

• Apply suggestions to docstrings.

  bdice

  authored
  b6d0a98

• Revise docstring.

  bdice

  committed
  b17dd45

• Remove metaclass initialization of _operation_hooks.

  bdice

  committed
  923bace

• Fix code examples for operation hook.

  bdice

  committed
  0d7a87e

• Rename _hooks to _project_hooks for clarity and symmetry with _operation_hooks.

  bdice

  committed
  dea7b50

• Update docs.

  bdice

  committed
  33eb3e5

Commits on Nov 19, 2021

• Document operation_hook in API docs.

  b-butler

  committed
  bfb7b17

• Improvements to FlowProject.operation_hook documentation

  b-butler

  committed
  5cc4341

Commits on Nov 22, 2021

• Changed to plural project hooks.

  klywang

  committed
  594cdbf

• Swapped hook and operation decorators in docstring and tests.

  klywang

  committed
  47cae5c

• Forgot to commit change in docstring for operation and hook decorator order.

  klywang

  committed
  c4d3ff0

• Change Hooks to _Hooks

  klywang

  committed
  286b7ec

• Update docs with operation_hooks name change

  b-butler

  committed
  bc62e80

• Flip order of test directives to make operation first

  b-butler

  committed
  3cbbcb5

Commits on Nov 23, 2021

• Merge branch 'master' into feature/hooks-core

  bdice

  authored
  1ee2124

Commits on Dec 5, 2021

• Merge remote-tracking branch 'origin/master' into feature/hooks-core

  bdice

  committed
  3e58f30

Commits on Dec 25, 2021

• Merge branch 'master' into feature/hooks-core

  klywang

  committed
  2d5b72d