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At request of Ivo
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jsnel committed Sep 29, 2024
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47 changes: 26 additions & 21 deletions AUTHORS.rst
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Authors
=======

Development Lead
----------------
* Joern Weissenborn <[email protected]> (`@joernweissenborn <https://github.com/joernweissenborn>`_)
* Joris Snellenburg <[email protected]> (`@jsnel <https://github.com/jsnel>`_)

Contributors
------------
* Sebastian Weigand <[email protected]> (`@s-weigand <https://github.com/s-weigand>`_)

Special Thanks
--------------
* Stefan Schuetz
* Sergey P. Laptenok

Supervision
--------------
* **dr. Ivo H.M. van Stokkum** <[email protected]> (`University profile <https://research.vu.nl/en/persons/ihm-van-stokkum>`_)
🏆 Core Team
-------------
* 💡📝 Joern Weissenborn <[email protected]> (`@joernweissenborn <https://github.com/joernweissenborn>`_)
* 🛠️📝 Joris Snellenburg <[email protected]> (`@jsnel <https://github.com/jsnel>`_)
* 🛠️📝 Sebastian Weigand <[email protected]> (`@s-weigand <https://github.com/s-weigand>`_)

🙏 Special Thanks
------------------
* 🙏 Stefan Schuetz
* 🙏 Sergey P. Laptenok

🎓 Supervision
---------------
* 🎓🙏 dr. Ivo H.M. van Stokkum <[email protected]> (`University profile <https://research.vu.nl/en/persons/ihm-van-stokkum>`_)

Core publications
-----------------
📖 Emoji Legend
----------------
* 💡 **Creator**: Creator of the package core
* 📝 **Author**: Significant contributions to the package
* 🛠️ **Maintainer**: Responsible for maintaining the package
* 🎓 **Supervisor**: Provided guidance and supervision
* 🙏 **Contributor**: Contributed code or documentation

📚 Core publications
---------------------
*The publications that describe fundamental aspects of the pyglotaran framework.*

1. Ivo H. M. van Stokkum, Joern Weißenborn, Sebastian Weigand, Joris Snellenburg. "pyglotaran: a lego-like Python framework for global and target analysis of time-resolved spectra". Photochem Photobiol Sci 22, 2413–2431 (2023). DOI: https://doi.org/10.1007/s43630-023-00460-y

Seminial papers
---------------
📚 Seminal papers
------------------
*The publications that ultimately inspired the creation of pyglotaran.*

1. Joris J. Snellenburg, Sergey Laptenok, Ralf Seger, Katharine M. Mullen, Ivo H. M. van Stokkum. "Glotaran: A Java-Based Graphical User Interface for the R Package TIMP". Journal of Statistical Software (2012), Volume 49, Number 3, Pages: 1–22. DOI: https://dx.doi.org/10.18637/jss.v049.i03
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9 changes: 3 additions & 6 deletions docs/source/installation.rst
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Recommended installation method: using uv
-----------------------------------------

It appears the Python community is quickly converging to uv as the preferred way to install Python and Python packages across all platforms.
They have an excellent `getting started <uv_getting_started>`_ guide available,
which explains how to `set it up <uv_installation>`_.
It appears the Python community is quickly converging to uv as the preferred way to install Python and Python packages across all platforms, so this is what we will be recommending.
They have an excellent `getting started <https://docs.astral.sh/uv/getting-started>`_ guide available, which explains how to `set it up <https://docs.astral.sh/uv/getting-started/installation>`_.

If you go down this route, note that uv can also be used to install Python itself, so you don't have to install it separately.

1. Install ``uv``: follow the `getting started <uv_getting_started>`_ guide to set it up for your platform.
1. Install ``uv``: follow the getting started guide (linked above) to set it up for your platform.

2. Use ``uv`` to install Python (if not already installed):

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.. _git: https://git-scm.com/
.. _uv_docs: https://docs.astral.sh/uv/
.. _uv_github: https://github.com/astral-sh/uv
.. _uv_getting_started: https://docs.astral.sh/uv/getting-started
.. _uv_installation: https://docs.astral.sh/uv/getting-started/installation
2 changes: 1 addition & 1 deletion tox.ini
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minversion = 3.4.0
skipsdist = true
skip_missing_interpreters=true
envlist = py{38,39,310}, pre-commit, docs, docs-notebooks, docs-links
envlist = py{310,311,312}, pre-commit, docs, docs-notebooks, docs-links

[pytest]
; Uncomment the following lines to deactivate pyglotaran all plugins
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