imi-2.0.0-beta.1

See the IMI 2.0 preprint manuscript for detailed technical information on the updates in IMI 2.0.

What's Changed

• Point source incorporation into clustering algorithm via csv file by @laestrada in #127
• Feature/blended-tropomi-gosat by @nicholasbalasus in #139
• Feature/create IMI docker image by @laestrada in #142
• Feature/kalman filter refactor by @laestrada in #133
• chore/component-variable-manifests: improve traceability of variables by @laestrada in #159
• Point source visualization and implementation into clustering algorit… by @laestrada in #152
• Feature/dynamic kf clustering by @laestrada in #160
• Feature/update to gc 14.1.0 by @laestrada in #161
• KF notebook bugfixes by @laestrada in #163
• fix regridding bug for domains with missing lat/lon data by @laestrada in #162
• [Draft] low latency boundary condition generation by @nicholasbalasus in #156
• Update boundary condition restart file from 72 L to 47 L by @nicholasbalasus in #170
• Feature/optimize domain edges by @laestrada in #169
• update to GC 14.2.1 by @nicholasbalasus in #172
• Bugfix preventing generation of one massive cluster to fill the grid by @laestrada in #178
• GCClassic 14.2.3 update by @laestrada in #179
• Fix bugs in make_state_vector.py by @laestrada in #182
• conda activate bugfix by @laestrada in #185
• Feature: cleanup script by @laestrada in #184
• Add global inversion capability + OH optimization by @msulprizio in #157
• Add stale Github action to automatically tag and close stale issues by @msulprizio in #192
• Bug fix for environment file activations by @nicholasbalasus in #194
• Re-run capability for Jacobian simulations by @eastjames in #188
• bugfix for defining geoschem domain based on grid cell edges (not centers) by @laestrada in #190
• Bugfix/run_inversion.sh error handling by @laestrada in #196
• Fix sbatch within sbatch printing by @nicholasbalasus in #199
• update bc smoothing to use -30 day smoothing as a backup by @laestrada in #195
• fix bug where symlinked restart would be overwritten by default restart by @laestrada in #200
• Bugfix/docker env by @laestrada in #201
• bugfix/ align restart path and boundary condition version by @laestrada in #204
• Feature/blended TROPOMI+GOSAT download script by @laestrada in #205
• bugfix/geoschem domain: fix bug in specification of geoschem domain for some custom domains by @laestrada in #207
• bugfix accounting for clustering in superobservation calculation in p… by @laestrada in #208
• Update operational TROPOMI data download script by @nicholasbalasus in #209
• Give operational download script more resources by @nicholasbalasus in #214
• update aws downloads to not require aws credentials by @laestrada in #215
• Feature: Lognormal error specification by @laestrada in #175
• plot state vector as part of imi preview by @laestrada in #216
• Bugfix/soil absorption accounting by @laestrada in #213
• Feature/ubuntu docker container by @laestrada in #220
• update parse yaml function to convert to shell variables by @laestrada in #218
• feature/imi-metadata collect geoschem version, IMI version, and tropomi retrieval version by @laestrada in #223
• Feature/point_sources: new point source capabilities and clustering updates by @eastjames in #219
• Feature/v2024-06-bcs by @nicholasbalasus in #227
• Fix logic for case when no plumes available by @eastjames in #229
• bugfix for scaling of So by @laestrada in #235
• Bugfix for TROPOMI operator retrieval times by @megan-he in #236
• Bugfix/jacobian perturbation fix by @laestrada in #226
• Updates to speedup Jacobian runtime by @msulprizio in #193
• Bugfix/allow zero buffer elems by @laestrada in #224
• Bugfix/prior emissions: switch to daily precompiled emissions by @laestrada in #239
• fix postproc_diags to include 0 hour for all tracers and only merge 0th hour by @laestrada in #242
• Replace sectoral emissions piechart with barchart in viz notebook by @laestrada in #243
• Expand variables in parse_yaml.py script. by @laestrada in #241
• Prior data dry run download by @laestrada in #246
• only apply scale factors to emission data variables by @laestrada in #249
• Bugfix/perturbation sfs by @laestrada in #251
• Clean up overlap between the IMI preview and the prior simulation by @msulprizio in #245
• Additional changes for global inversion, including option to use a custom periods.csv to define Kalman Filter update periods by @megan-he in #250
• Feature/upgrade conda env by @laestrada in #221
• Add lat/lon bounds for 2x2.5 by @megan-he in #254
• Restore use of archived HEMCO standalone output for generating state vectors by @msulprizio in #255
• Add Period CSV file options to default config.yml file and set MakePeriodsCSV to false by default by @msulprizio in #256
• Feature/Include Water Observations and add dynamic range colorbar for xch4 plots by @laestrada in #260
• bugfix for printing posterior emissions by @nicholasbalasus in #261
• default to End for DiagnFreq by @nicholasbalasus in #262
• account for GC bounds being grid box edges by @nicholasbalasus in #263
• Bugfix/new-env by @nicholasbalasus in #264
• improve error handling to prevent imi runs from continuing when sbatc… by @laestrada in #265
• Remove calc_sensi.py and calculate sensitivities on XCH4 by @eastjames in #252
• Bugfix/hemco grid precision by @laestrada in #267
• bugfix/handle-operator-updates-in-bcs by @nicholasbalasus in #268
• Fix and improve IMI Preview DOFS calculation by @laestrada in #269
• Move zero scale factor addition to template.sh by @laestrada in #270
• Optimize OH by hemisphere instead of globally by @msulprizio in #266
• add additional config variables to control inversion step resource allocation by @laestrada in #272

New Contributors

• @eastjames made their first contribution in #188
• @megan-he made their first contribution in #236

Full Changelog: imi-1.2.1...imi-2.0.0-beta.1