updates for v2023-10 boundary conditions

geoschem · Oct 20, 2023 · f2964a6 · f2964a6
1 parent 5fb12f6
commit f2964a6
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Showing 3 changed files with 18 additions and 8 deletions.
diff --git a/envs/Harvard-Cannon/config.harvard-cannon.yml b/envs/Harvard-Cannon/config.harvard-cannon.yml
@@ -168,14 +168,14 @@ RestartDownload: false
 
 ## Path to initial GEOS-Chem restart file + prefix
 ##   ("YYYYMMDD_0000z.nc4" will be appended)
-RestartFilePrefix: "/n/holylfs05/LABS/jacob_lab/imi/ch4/tropomi-boundary-conditions/v2023-06/GEOSChem.BoundaryConditions."
-RestartFilePreviewPrefix: "/n/holylfs05/LABS/jacob_lab/imi/ch4/tropomi-boundary-conditions/v2023-06/GEOSChem.BoundaryConditions."
+RestartFilePrefix: "/n/holylfs05/LABS/jacob_lab/imi/ch4/tropomi-boundary-conditions/v2023-10/GEOSChem.BoundaryConditions."
+RestartFilePreviewPrefix: "/n/holylfs05/LABS/jacob_lab/imi/ch4/tropomi-boundary-conditions/v2023-10/GEOSChem.BoundaryConditions."
 
 ## Path to GEOS-Chem boundary condition files (for nested grid simulations)
 ## Must put backslash before $ in $YYYY$MM$DD to properly work in sed command
 ## BCversion will be appended to the end of this path. ${BCpath}/${BCversion}
 BCpath: "/n/holylfs05/LABS/jacob_lab/imi/ch4/tropomi-boundary-conditions"
-BCversion: "v2023-06"
+BCversion: "v2023-10"
 
 ## Options to download missing GEOS-Chem input data from AWS S3
 ##  NOTE: Must have AWS CLI enabled

diff --git a/src/write_BCs/config_boundary_conditions.yml b/src/write_BCs/config_boundary_conditions.yml
@@ -1,9 +1,9 @@
 ## Date range (inclusive) that you want to generate BCs for
 startDate: "20180401"
-endDate: "20180531"
+endDate: "20230630"
 
 ## A directory with a lot of space where you can write the BCs (and intermediate files)
-workDir: "/n/holylfs05/LABS/jacob_lab/Users/nbalasus/v2023-09-IMI-Blended-BCs"
+workDir: "/n/holylfs05/LABS/jacob_lab/Users/nbalasus/v2023-10-IMI-Blended-BCs"
 
 ## Paths to TROPOMI data and blended TROPOMI+GOSAT data
 tropomiDir: "/n/holylfs05/LABS/jacob_lab/Lab/imi/ch4/tropomi"
@@ -13,10 +13,10 @@ blendedDir: "/n/holylfs05/LABS/jacob_lab/Lab/imi/ch4/blended"
 condaEnv: imi_env
 geosChemEnv: "/n/home06/nbalasus/envs/gcclassic.rocky+gnu10.minimal.env"
 geosChemDataPath: "/n/holyscratch01/external_repos/GEOS-CHEM/gcgrid/gcdata/ExtData"
-partition: huce_cascade
+partition: huce_cascade,seas_compute,huce_ice
 
 ## A restart file for GEOS-Chem for your simulation start date (startdate - 16 days)
 restartFilePath: "/path/to/restart/file"
 
 # Debug or not?
-debug: false
+debug: true
diff --git a/src/write_BCs/run_boundary_conditions.sh b/src/write_BCs/run_boundary_conditions.sh
@@ -98,9 +98,19 @@ if ! ${debug}; then
     rm "${cwd}/debug.log"
 fi
 
+# Modify HEMCO_Config.rc to allow for post-2022 GFED4
+sed -i -e "s|DM_TEMP       1997-2022/1-12/01/0    RF|DM_TEMP       1997-2022/1-12/01/0    C|g" \
+    -e "s|DM_AGRI       1997-2022/1-12/01/0    RF|DM_AGRI       1997-2022/1-12/01/0    C|g" \
+    -e "s|DM_DEFO       1997-2022/1-12/01/0    RF|DM_DEFO       1997-2022/1-12/01/0    C|g" \
+    -e "s|DM_BORF       1997-2022/1-12/01/0    RF|DM_BORF       1997-2022/1-12/01/0    C|g" \
+    -e "s|DM_PEAT       1997-2022/1-12/01/0    RF|DM_PEAT       1997-2022/1-12/01/0    C|g" \
+    -e "s|DM_SAVA       1997-2022/1-12/01/0    RF|DM_SAVA       1997-2022/1-12/01/0    C|g" \
+    -e "s|GFED_FRACDAY 2003-2022/1-12/1-31/0  RF|GFED_FRACDAY 2003-2022/1-12/1-31/0  C|g" \
+    -e "s|GFED_FRAC3HR 2003-2022/1-12/1/0-23  RF|GFED_FRAC3HR 2003-2022/1-12/1/0-23  C|g" HEMCO_Config.rc
+
 # Modify and submit the run script
 cp runScriptSamples/operational_examples/harvard_cannon/geoschem.run .
-sed -i -e "s|huce_intel,seas_compute,shared|huce_cascade|g" \
+sed -i -e "s|huce_intel,seas_compute,shared|${partition}|g" \
     -e "s|--mem=15000|--mem=64000|g" \
     -e "s|-t 0-12:00|-t 07-00:00|g"\
     -e "s|-c 8|-c 24|g" geoschem.run