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πŸ»β‡”πŸ¨ Calculate distance matrix from ChewBBACA cgMLST allele call tables

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genpat-it/cgmlst-dists

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Description

This is a fork of the original cgmlst-dists project by Torsten Seemann (https://github.com/tseemann/cgmlst-dists).

This version allows to manage large input files and bypasses the Integer Overflow issue when the calculation of the final memory size of the distance vector is greater than MAX_INT.

Compile

make

Check

make check

Example of usage

./cgmlst-dists test/100.tab > 100output.tab

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πŸ»β‡”πŸ¨ Calculate distance matrix from ChewBBACA cgMLST allele call tables

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