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Add Tutorial and Input Bin Sets Quality Reports #25

Merged
merged 38 commits into from
Sep 4, 2024
Merged

Add Tutorial and Input Bin Sets Quality Reports #25

merged 38 commits into from
Sep 4, 2024

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JeanMainguy
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@JeanMainguy JeanMainguy commented Sep 4, 2024

This PR brings a few updates to the main branch in prevision of the version 1.0.2 release.

  • New Tutorial: Added a tutorial that walks through how to use Binette with real data. (from PR Add a Tutorial in the Documentation #23 )

  • Better Bin Set Naming: Improved how bin set names are inferred from input directories or tables.

  • New Output Files:

    • The directory input_bins_quality_reports is now created in the output repository, which stores quality reports for the initial bin sets. This helps compare how much Binette improves the bins compare to the input bins. To support this, I tweaked the code to track the origin of bins during dereplication.
  • Refactoring:

    • Cleaned up some typing issues flagged by Pylance.
    • Switched from os.path to pathlib for better path handling.
  • CI Updates: Added MacOS runner testing to the CI pipeline. (from PR Run CI on macOS runner #24 )

@JeanMainguy JeanMainguy merged commit 277d433 into main Sep 4, 2024
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