Merge pull request #213 from gbouras13/1.1.0

fix pharokka experimental
gbouras13 · Oct 19, 2022 · a9bab00 · a9bab00
2 parents 4b696cd + 7164645
commit a9bab00
Showing 1 changed file with 0 additions and 7 deletions.
diff --git a/bin/pharokka.py b/bin/pharokka.py
@@ -108,13 +108,6 @@
     # running mmseqs2
     logger.info("Starting mmseqs2.")
     processes.run_mmseqs(db_dir, out_dir, args.threads, logger, gene_predictor, args.evalue)
-
-    # sensitive 
-
-    if args.meta == False:
-        processes.get_unannotated_cds(out_dir, gene_predictor)
-        processes.hmmscan( db_dir, out_dir,logger, args.threads, args.evalue)
-
     processes.run_mmseqs_card(db_dir, out_dir, args.threads, logger, gene_predictor)
     processes.run_mmseqs_vfdb(db_dir, out_dir, args.threads, logger, gene_predictor)