Merge pull request #296 from gbouras13/dev

pharokka proteins mash skip check
gbouras13 · Sep 21, 2023 · 1dc340f · 1dc340f
2 parents b34eaba + 696a6f1
commit 1dc340f
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/bin/pharokka_proteins.py b/bin/pharokka_proteins.py
@@ -80,7 +80,7 @@ def main():
 
     # dependencies
     logger.info("Checking dependencies.")
-    check_dependencies()
+    check_dependencies(False) # to check pharokka_proteins.py, don't need mash
 
     # instantiation/checking fasta and gene_predictor
     validate_fasta(args.infile)