Dev (#16)

* README.md * Update to gatk4.1 * Updated forum links in Readme * changed ref file VM path to google bucket path * updated import link to git tag url
gatk-workflows · Feb 1, 2019 · 3b2a121 · 3b2a121
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commit 3b2a121
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diff --git a/mutect2-normal-normal.wdl b/mutect2-normal-normal.wdl
@@ -21,7 +21,7 @@
 ## pages at https://hub.docker.com/r/broadinstitute/* for detailed licensing information
 ## pertaining to the included programs.
 
-import "./mutect2.wdl" as m2
+import "https://raw.githubusercontent.com/gatk-workflows/gatk4-somatic-snvs-indels/2.3.0/mutect2_nio.wdl" as m2
 
 workflow Mutect2NormalNormal {
 	File? intervals

diff --git a/mutect2_pon.wdl b/mutect2_pon.wdl
@@ -14,7 +14,7 @@
 #   this logic *must* go into each task.  Therefore, there is a lot of duplicated code.  This allows users to specify a jar file
 #   independent of what is in the docker file.  See the README.md for more info.
 #
-import "mutect2.wdl" as m2
+import "https://raw.githubusercontent.com/gatk-workflows/gatk4-somatic-snvs-indels/2.3.0/mutect2_nio.wdl" as m2
 
 workflow Mutect2_Panel {
     # inputs