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Pull requests: galaxyproject/tools-iuc

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313 Open 5,127 Closed
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Pull requests list

Updating tools/stringtie from version 2.2.3 to 3.0.0
#6673 opened Jan 13, 2025 by gxydevbot Loading…
Updating tools/sansa from version 0.2.2 to 0.2.3
#6672 opened Jan 13, 2025 by gxydevbot Loading…
Updating tools/falco from version 1.2.4 to 1.2.5
#6671 opened Jan 13, 2025 by gxydevbot Loading…
hicBuildMatrix SAM inputs changed from repeat to plain params
#6670 opened Jan 10, 2025 by pavanvidem Loading…
3 of 5 tasks
1
added squirrel MPXV analysis
#6666 opened Jan 9, 2025 by ammaraziz Loading…
3 of 5 tasks
24
Add data manager for clair3 models
#6659 opened Jan 7, 2025 by pvanheus Loading…
2 of 5 tasks
6
Updating tools/lineagespot from version 1.6.0 to 1.10.0
#6657 opened Jan 6, 2025 by gxydevbot Loading…
Updating tools/cemitool from version 1.26.0 to 1.30.0
#6656 opened Jan 6, 2025 by gxydevbot Loading…
Updating tools/infercnv from version 1.20.0 to 1.22.0
#6654 opened Dec 30, 2024 by gxydevbot Loading…
Updating tools/dexseq from version 1.48.0 to 1.52.0
#6653 opened Dec 30, 2024 by gxydevbot Loading…
Updating tools/annotatemyids from version 3.18.0 to 3.20.0
#6652 opened Dec 30, 2024 by gxydevbot Loading…
update pharokka to latest version
#6651 opened Dec 28, 2024 by bgruening Loading…
3 of 5 tasks
7
Updating tools/lastz from version 1.04.22 to 1.04.41
#6649 opened Dec 23, 2024 by gxydevbot Loading…
4
Add deeparg
#6646 opened Dec 19, 2024 by hugolefeuvre Loading…
3 of 5 tasks
5
wrappers for ppanggolin all and ppanggolin msa
#6645 opened Dec 18, 2024 by thomas-lacroix Loading…
3 of 5 tasks
23
[EMBOSS] Add Needleall tool (v6) and bump version for needle to v6
#6643 opened Dec 16, 2024 by shiltemann Loading…
3 of 5 tasks
20
Fastp fixes
#6642 opened Dec 16, 2024 by bernt-matthias Loading…
3 of 5 tasks
1
Updating tools/umi_tools from version 1.1.5 to 1.1.6
#6639 opened Dec 16, 2024 by gxydevbot Loading…
Updating tools/tximport from version 1.30.0 to 1.34.0
#6638 opened Dec 16, 2024 by gxydevbot Loading…
1
Updating tools/pbmm2 from version 1.16.0 to 1.16.99
#6637 opened Dec 16, 2024 by gxydevbot Loading…
Updating tools/decontam from version 1.22.0 to 1.26.0
#6634 opened Dec 16, 2024 by gxydevbot Loading…
Updating tools/cutadapt from version 4.9 to 5.0
#6633 opened Dec 16, 2024 by gxydevbot Loading…
Updating tools/ancombc from version 1.4.0 to 2.8.0
#6632 opened Dec 16, 2024 by gxydevbot Loading…
volcanoplot bump
#6622 opened Dec 11, 2024 by bgruening Loading…
5 tasks
1
8
Sourmash wrapper
#6618 opened Dec 11, 2024 by renu-pal • Draft
4
ProTip! What’s not been updated in a month: updated:<2024-12-13.