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Merge pull request #6 from fractal-analytics-platform/build-img-browser
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Build image browser to display and filter OME-ZARR wells
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jluethi authored May 23, 2024
2 parents b1b5f69 + b79ef27 commit f1ab1ff
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Showing 3 changed files with 148 additions and 257 deletions.
5 changes: 4 additions & 1 deletion src/napari_ome_zarr_navigator/_sample_data.py
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import hashlib
import wget
import shutil
import logging

from napari.types import LayerDataTuple

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from napari_ome_zarr_navigator import _TEST_DATA_DIR

logging.getLogger("ome_zarr").setLevel(logging.WARN)


def load_ome_zarr_from_zenodo(doi: str, zarr_url: Union[str, Path]):
doi_path = Path(_TEST_DATA_DIR).joinpath(doi.replace("/", "_"))
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def hiPSC_zarr() -> list[LayerDataTuple]:
doi = "10.5281_zenodo.10424292"
doi = "10.5281_zenodo.11262587"
zarr_url = "20200812-CardiomyocyteDifferentiation14-Cycle1_mip.zarr"
return load_zarr(doi, zarr_url)

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