Merge pull request #15 from fractal-napari-plugins-collection/14_4D_l…

…abel_img Add catch for 4D label images
fractal-napari-plugins-collection · Sep 16, 2024 · 391ad91 · 391ad91
2 parents f78dfe1 + 5409de6
commit 391ad91
Showing 1 changed file with 6 additions and 0 deletions.
diff --git a/src/napari_ome_zarr_navigator/ome_zarr_image.py b/src/napari_ome_zarr_navigator/ome_zarr_image.py
@@ -422,13 +422,19 @@ def load_label_roi(
                 img_multiscale=self.image_meta.multiscale,
             )
 
+        # Hacky way to address
+        # https://github.com/fractal-napari-plugins-collection/napari-ome-zarr-navigator/issues/14
+        # Handle 4D label arrays
+        subset = 0 if label_multiscale.axes[0].name == "c" else None
+
         return self.load_zarr_array_index_based(
             zarr_url=zarr_url_label,
             roi_table=roi_table,
             roi_index=roi_index,
             multiscale=label_multiscale,
             level_path=level_path,
             as_np=as_np,
+            subset=subset,
         )
 
     def get_omero_metadata(self, channel_name: str):