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fractal-analytics-platform · Dec 5, 2024 · a4e6996 · a4e6996
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diff --git a/api/core/index.html b/api/core/index.html
@@ -2624,7 +2624,7 @@ <h4 id="ngio.core.NgffImage.update_omero_window" class="doc doc-heading">
     <span class="md-icon" title="Last update">
       <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M21 13.1c-.1 0-.3.1-.4.2l-1 1 2.1 2.1 1-1c.2-.2.2-.6 0-.8l-1.3-1.3c-.1-.1-.2-.2-.4-.2m-1.9 1.8-6.1 6V23h2.1l6.1-6.1zM12.5 7v5.2l4 2.4-1 1L11 13V7zM11 21.9c-5.1-.5-9-4.8-9-9.9C2 6.5 6.5 2 12 2c5.3 0 9.6 4.1 10 9.3-.3-.1-.6-.2-1-.2s-.7.1-1 .2C19.6 7.2 16.2 4 12 4c-4.4 0-8 3.6-8 8 0 4.1 3.1 7.5 7.1 7.9l-.1.2z"/></svg>
     </span>
-    <span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-date">December 4, 2024</span>
+    <span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-date">December 5, 2024</span>
   </span>
 
 
@@ -2634,7 +2634,7 @@ <h4 id="ngio.core.NgffImage.update_omero_window" class="doc doc-heading">
     <span class="md-icon" title="Created">
       <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M14.47 15.08 11 13V7h1.5v5.25l3.08 1.83c-.41.28-.79.62-1.11 1m-1.39 4.84c-.36.05-.71.08-1.08.08-4.42 0-8-3.58-8-8s3.58-8 8-8 8 3.58 8 8c0 .37-.03.72-.08 1.08.69.1 1.33.32 1.92.64.1-.56.16-1.13.16-1.72 0-5.5-4.5-10-10-10S2 6.5 2 12s4.47 10 10 10c.59 0 1.16-.06 1.72-.16-.32-.59-.54-1.23-.64-1.92M18 15v3h-3v2h3v3h2v-3h3v-2h-3v-3z"/></svg>
     </span>
-    <span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-date">December 4, 2024</span>
+    <span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-date">December 5, 2024</span>
   </span>
 
 

diff --git a/getting-started/index.html b/getting-started/index.html
@@ -676,7 +676,7 @@ <h2 id="example-usage">Example Usage</h2>
     <span class="md-icon" title="Last update">
       <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M21 13.1c-.1 0-.3.1-.4.2l-1 1 2.1 2.1 1-1c.2-.2.2-.6 0-.8l-1.3-1.3c-.1-.1-.2-.2-.4-.2m-1.9 1.8-6.1 6V23h2.1l6.1-6.1zM12.5 7v5.2l4 2.4-1 1L11 13V7zM11 21.9c-5.1-.5-9-4.8-9-9.9C2 6.5 6.5 2 12 2c5.3 0 9.6 4.1 10 9.3-.3-.1-.6-.2-1-.2s-.7.1-1 .2C19.6 7.2 16.2 4 12 4c-4.4 0-8 3.6-8 8 0 4.1 3.1 7.5 7.1 7.9l-.1.2z"/></svg>
     </span>
-    <span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-date">December 4, 2024</span>
+    <span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-date">December 5, 2024</span>
   </span>
 
 
@@ -686,7 +686,7 @@ <h2 id="example-usage">Example Usage</h2>
     <span class="md-icon" title="Created">
       <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M14.47 15.08 11 13V7h1.5v5.25l3.08 1.83c-.41.28-.79.62-1.11 1m-1.39 4.84c-.36.05-.71.08-1.08.08-4.42 0-8-3.58-8-8s3.58-8 8-8 8 3.58 8 8c0 .37-.03.72-.08 1.08.69.1 1.33.32 1.92.64.1-.56.16-1.13.16-1.72 0-5.5-4.5-10-10-10S2 6.5 2 12s4.47 10 10 10c.59 0 1.16-.06 1.72-.16-.32-.59-.54-1.23-.64-1.92M18 15v3h-3v2h3v3h2v-3h3v-2h-3v-3z"/></svg>
     </span>
-    <span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-date">December 4, 2024</span>
+    <span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-date">December 5, 2024</span>
   </span>
 
 

diff --git a/index.html b/index.html
@@ -799,7 +799,7 @@ <h2 id="license">License</h2>
     <span class="md-icon" title="Last update">
       <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M21 13.1c-.1 0-.3.1-.4.2l-1 1 2.1 2.1 1-1c.2-.2.2-.6 0-.8l-1.3-1.3c-.1-.1-.2-.2-.4-.2m-1.9 1.8-6.1 6V23h2.1l6.1-6.1zM12.5 7v5.2l4 2.4-1 1L11 13V7zM11 21.9c-5.1-.5-9-4.8-9-9.9C2 6.5 6.5 2 12 2c5.3 0 9.6 4.1 10 9.3-.3-.1-.6-.2-1-.2s-.7.1-1 .2C19.6 7.2 16.2 4 12 4c-4.4 0-8 3.6-8 8 0 4.1 3.1 7.5 7.1 7.9l-.1.2z"/></svg>
     </span>
-    <span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-date">December 4, 2024</span>
+    <span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-date">December 5, 2024</span>
   </span>
 
 
@@ -809,7 +809,7 @@ <h2 id="license">License</h2>
     <span class="md-icon" title="Created">
       <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M14.47 15.08 11 13V7h1.5v5.25l3.08 1.83c-.41.28-.79.62-1.11 1m-1.39 4.84c-.36.05-.71.08-1.08.08-4.42 0-8-3.58-8-8s3.58-8 8-8 8 3.58 8 8c0 .37-.03.72-.08 1.08.69.1 1.33.32 1.92.64.1-.56.16-1.13.16-1.72 0-5.5-4.5-10-10-10S2 6.5 2 12s4.47 10 10 10c.59 0 1.16-.06 1.72-.16-.32-.59-.54-1.23-.64-1.92M18 15v3h-3v2h3v3h2v-3h3v-2h-3v-3z"/></svg>
     </span>
-    <span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-date">December 4, 2024</span>
+    <span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-date">December 5, 2024</span>
   </span>
 
 

diff --git a/notebooks/basic_usage/index.html b/notebooks/basic_usage/index.html
@@ -1748,7 +1748,7 @@ <h2 id="tables">Tables<a class="anchor-link" href="#tables">¶</a></h2><p>The <c
 <div class="jp-OutputArea-child">
 <div class="jp-OutputPrompt jp-OutputArea-prompt"></div>
 <div class="jp-RenderedText jp-OutputArea-output" data-mime-type="application/vnd.jupyter.stderr" tabindex="0">
-<pre>/opt/hostedtoolcache/Python/3.12.7/x64/lib/python3.12/site-packages/anndata/_core/aligned_df.py:68: ImplicitModificationWarning: Transforming to str index.
+<pre>/opt/hostedtoolcache/Python/3.13.1/x64/lib/python3.13/site-packages/anndata/_core/aligned_df.py:68: ImplicitModificationWarning: Transforming to str index.
   warnings.warn("Transforming to str index.", ImplicitModificationWarning)
 </pre>
 </div>
@@ -2283,7 +2283,7 @@ <h2 id="steam-an-ngffimage-over-http">Steam an NgffImage over HTTP<a class="anch
     <span class="md-icon" title="Last update">
       <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M21 13.1c-.1 0-.3.1-.4.2l-1 1 2.1 2.1 1-1c.2-.2.2-.6 0-.8l-1.3-1.3c-.1-.1-.2-.2-.4-.2m-1.9 1.8-6.1 6V23h2.1l6.1-6.1zM12.5 7v5.2l4 2.4-1 1L11 13V7zM11 21.9c-5.1-.5-9-4.8-9-9.9C2 6.5 6.5 2 12 2c5.3 0 9.6 4.1 10 9.3-.3-.1-.6-.2-1-.2s-.7.1-1 .2C19.6 7.2 16.2 4 12 4c-4.4 0-8 3.6-8 8 0 4.1 3.1 7.5 7.1 7.9l-.1.2z"/></svg>
     </span>
-    <span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-date">December 4, 2024</span>
+    <span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-date">December 5, 2024</span>
   </span>
 
 
@@ -2293,7 +2293,7 @@ <h2 id="steam-an-ngffimage-over-http">Steam an NgffImage over HTTP<a class="anch
     <span class="md-icon" title="Created">
       <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M14.47 15.08 11 13V7h1.5v5.25l3.08 1.83c-.41.28-.79.62-1.11 1m-1.39 4.84c-.36.05-.71.08-1.08.08-4.42 0-8-3.58-8-8s3.58-8 8-8 8 3.58 8 8c0 .37-.03.72-.08 1.08.69.1 1.33.32 1.92.64.1-.56.16-1.13.16-1.72 0-5.5-4.5-10-10-10S2 6.5 2 12s4.47 10 10 10c.59 0 1.16-.06 1.72-.16-.32-.59-.54-1.23-.64-1.92M18 15v3h-3v2h3v3h2v-3h3v-2h-3v-3z"/></svg>
     </span>
-    <span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-date">December 4, 2024</span>
+    <span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-date">December 5, 2024</span>
   </span>
 
 

diff --git a/notebooks/image/index.html b/notebooks/image/index.html
@@ -1987,7 +1987,7 @@ <h2 id="creating-a-new-table">Creating a new table<a class="anchor-link" href="#
 <div class="jp-OutputArea-child">
 <div class="jp-OutputPrompt jp-OutputArea-prompt"></div>
 <div class="jp-RenderedText jp-OutputArea-output" data-mime-type="application/vnd.jupyter.stderr" tabindex="0">
-<pre>/opt/hostedtoolcache/Python/3.12.7/x64/lib/python3.12/site-packages/anndata/_core/anndata.py:1754: UserWarning: Observation names are not unique. To make them unique, call `.obs_names_make_unique`.
+<pre>/opt/hostedtoolcache/Python/3.13.1/x64/lib/python3.13/site-packages/anndata/_core/anndata.py:1756: UserWarning: Observation names are not unique. To make them unique, call `.obs_names_make_unique`.
   utils.warn_names_duplicates("obs")
 </pre>
 </div>
@@ -2027,32 +2027,32 @@ <h2 id="creating-a-new-table">Creating a new table<a class="anchor-link" href="#
 <tbody>
 <tr>
 <th>1</th>
-<td>0.743632</td>
-<td>0.997026</td>
+<td>0.210381</td>
+<td>0.267569</td>
 <td>FOV_1</td>
 </tr>
 <tr>
 <th>2</th>
-<td>0.631801</td>
-<td>0.143512</td>
+<td>0.046606</td>
+<td>0.521061</td>
 <td>FOV_1</td>
 </tr>
 <tr>
 <th>3</th>
-<td>0.874973</td>
-<td>0.682130</td>
+<td>0.807184</td>
+<td>0.685996</td>
 <td>FOV_1</td>
 </tr>
 <tr>
 <th>4</th>
-<td>0.060081</td>
-<td>0.258161</td>
+<td>0.987747</td>
+<td>0.685821</td>
 <td>FOV_1</td>
 </tr>
 <tr>
 <th>5</th>
-<td>0.605068</td>
-<td>0.251954</td>
+<td>0.546357</td>
+<td>0.420459</td>
 <td>FOV_1</td>
 </tr>
 <tr>
@@ -2063,32 +2063,32 @@ <h2 id="creating-a-new-table">Creating a new table<a class="anchor-link" href="#
 </tr>
 <tr>
 <th>2987</th>
-<td>0.309137</td>
-<td>0.684659</td>
+<td>0.520942</td>
+<td>0.507943</td>
 <td>FOV_4</td>
 </tr>
 <tr>
 <th>2991</th>
-<td>0.298794</td>
-<td>0.425536</td>
+<td>0.521932</td>
+<td>0.226224</td>
 <td>FOV_4</td>
 </tr>
 <tr>
 <th>2993</th>
-<td>0.911757</td>
-<td>0.766242</td>
+<td>0.854616</td>
+<td>0.043566</td>
 <td>FOV_4</td>
 </tr>
 <tr>
 <th>2995</th>
-<td>0.746297</td>
-<td>0.841617</td>
+<td>0.482120</td>
+<td>0.882421</td>
 <td>FOV_4</td>
 </tr>
 <tr>
 <th>2996</th>
-<td>0.291972</td>
-<td>0.907045</td>
+<td>0.022039</td>
+<td>0.078777</td>
 <td>FOV_4</td>
 </tr>
 </tbody>
@@ -2130,7 +2130,7 @@ <h2 id="creating-a-new-table">Creating a new table<a class="anchor-link" href="#
     <span class="md-icon" title="Last update">
       <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M21 13.1c-.1 0-.3.1-.4.2l-1 1 2.1 2.1 1-1c.2-.2.2-.6 0-.8l-1.3-1.3c-.1-.1-.2-.2-.4-.2m-1.9 1.8-6.1 6V23h2.1l6.1-6.1zM12.5 7v5.2l4 2.4-1 1L11 13V7zM11 21.9c-5.1-.5-9-4.8-9-9.9C2 6.5 6.5 2 12 2c5.3 0 9.6 4.1 10 9.3-.3-.1-.6-.2-1-.2s-.7.1-1 .2C19.6 7.2 16.2 4 12 4c-4.4 0-8 3.6-8 8 0 4.1 3.1 7.5 7.1 7.9l-.1.2z"/></svg>
     </span>
-    <span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-date">December 4, 2024</span>
+    <span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-date">December 5, 2024</span>
   </span>
 
 
@@ -2140,7 +2140,7 @@ <h2 id="creating-a-new-table">Creating a new table<a class="anchor-link" href="#
     <span class="md-icon" title="Created">
       <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M14.47 15.08 11 13V7h1.5v5.25l3.08 1.83c-.41.28-.79.62-1.11 1m-1.39 4.84c-.36.05-.71.08-1.08.08-4.42 0-8-3.58-8-8s3.58-8 8-8 8 3.58 8 8c0 .37-.03.72-.08 1.08.69.1 1.33.32 1.92.64.1-.56.16-1.13.16-1.72 0-5.5-4.5-10-10-10S2 6.5 2 12s4.47 10 10 10c.59 0 1.16-.06 1.72-.16-.32-.59-.54-1.23-.64-1.92M18 15v3h-3v2h3v3h2v-3h3v-2h-3v-3z"/></svg>
     </span>
-    <span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-date">December 4, 2024</span>
+    <span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-date">December 5, 2024</span>
   </span>
 
 

diff --git a/notebooks/processing/index.html b/notebooks/processing/index.html
diff --git a/search/search_index.json b/search/search_index.json
diff --git a/sitemap.xml b/sitemap.xml
@@ -2,26 +2,26 @@
 <urlset xmlns="http://www.sitemaps.org/schemas/sitemap/0.9">
     <url>
          <loc>https://github.com/fractal-analytics-platform/ngio.git/</loc>
-         <lastmod>2024-12-04</lastmod>
+         <lastmod>2024-12-05</lastmod>
     </url>
     <url>
          <loc>https://github.com/fractal-analytics-platform/ngio.git/getting-started/</loc>
-         <lastmod>2024-12-04</lastmod>
+         <lastmod>2024-12-05</lastmod>
     </url>
     <url>
          <loc>https://github.com/fractal-analytics-platform/ngio.git/api/core/</loc>
-         <lastmod>2024-12-04</lastmod>
+         <lastmod>2024-12-05</lastmod>
     </url>
     <url>
          <loc>https://github.com/fractal-analytics-platform/ngio.git/notebooks/basic_usage/</loc>
-         <lastmod>2024-12-04</lastmod>
+         <lastmod>2024-12-05</lastmod>
     </url>
     <url>
          <loc>https://github.com/fractal-analytics-platform/ngio.git/notebooks/image/</loc>
-         <lastmod>2024-12-04</lastmod>
+         <lastmod>2024-12-05</lastmod>
     </url>
     <url>
          <loc>https://github.com/fractal-analytics-platform/ngio.git/notebooks/processing/</loc>
-         <lastmod>2024-12-04</lastmod>
+         <lastmod>2024-12-05</lastmod>
     </url>
 </urlset>
diff --git a/sitemap.xml.gz b/sitemap.xml.gz