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[auto] Update dependencies in poetry.lock #887

Merged
merged 1 commit into from
Jan 8, 2025
Merged

[auto] Update dependencies in poetry.lock #887

merged 1 commit into from
Jan 8, 2025

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tcompa
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@tcompa tcompa commented Dec 31, 2024

Updated dependencies:

Updating dependencies
Resolving dependencies...

Package operations: 0 installs, 3 updates, 0 removals

  - Updating charset-normalizer (3.4.0 -> 3.4.1)
  - Updating scipy (1.14.1 -> 1.15.0)
  - Updating array-api-compat (1.9.1 -> 1.10.0)

Writing lock file

Outdated dependencies before PR:

anndata                                            0.10.9              
anyio                                          (!) 4.7.0               
array-api-compat                                   1.9.1               
astropy                                        (!) 6.1.7               
astropy-iers-data                              (!) 0.2024.12.23.0.33.24
asttokens                                      (!) 2.4.1               
cellpose                                       (!) 2.2.3               
charset-normalizer                                 3.4.0               
docstring-parser                                   0.15                
executing                                      (!) 0.10.0              
filelock                                           3.13.4              
imagecodecs                                    (!) 2024.9.22           
imageio-ffmpeg                                 (!) 0.4.9               
ipympl                                         (!) 0.9.5               
kiwisolver                                     (!) 1.4.7               
lxml                                               4.9.4               
mistune                                        (!) 3.0.2               
napari-segment-blobs-and-things-with-membranes (!) 0.3.8               
napari-skimage-regionprops                     (!) 0.8.2               
nbconvert                                      (!) 7.16.4              
numcodecs                                          0.13.1              
numpy                                              2.1.0               
nvidia-cublas-cu12                             (!) 12.4.5.8            
nvidia-cuda-cupti-cu12                         (!) 12.4.127            
nvidia-cuda-nvrtc-cu12                         (!) 12.4.127            
nvidia-cuda-runtime-cu12                       (!) 12.4.127            
nvidia-cudnn-cu12                              (!) 9.1.0.70            
nvidia-cufft-cu12                              (!) 11.2.1.3            
nvidia-curand-cu12                             (!) 10.3.5.147          
nvidia-cusolver-cu12                           (!) 11.6.1.9            
nvidia-cusparse-cu12                           (!) 12.3.1.170          
nvidia-nccl-cu12                               (!) 2.21.5              
nvidia-nvjitlink-cu12                          (!) 12.4.127            
nvidia-nvtx-cu12                               (!) 12.4.127            
pillow                                         (!) 11.0.0              
pooch                                          (!) 1.8.0               
pyconify                                       (!) 0.1.6               
pydantic                                           2.8.2               
pydantic-core                                      2.20.1              
pygments                                       (!) 2.18.0              
pyparsing                                      (!) 3.2.0               
pytest                                         (!) 7.4.4               
scipy                                              1.14.1              
setuptools                                         75.6.0              
stack-data                                     (!) 0.5.1               
stackview                                      (!) 0.8.2               
superqt                                        (!) 0.7.0               
sympy                                          (!) 1.13.1              
zarr                                               2.18.3              

Outdated dependencies after PR:

anndata                                            0.10.9     0.11.1   
astropy                                        (!) 6.1.7      7.0.0    
asttokens                                      (!) 2.4.1      3.0.0    
cellpose                                       (!) 2.2.3      3.1.0    
docstring-parser                                   0.15       0.16     
executing                                      (!) 0.10.0     2.1.0    
filelock                                           3.13.4     3.16.1   
imageio-ffmpeg                                 (!) 0.4.9      0.5.1    
lxml                                               4.9.4      5.3.0    
napari-segment-blobs-and-things-with-membranes (!) 0.3.8      0.3.12   
napari-skimage-regionprops                     (!) 0.8.2      0.10.1   
numcodecs                                          0.13.1     0.14.1   
numpy                                              2.1.0      2.2.1    
nvidia-cublas-cu12                             (!) 12.4.5.8   12.6.4.1 
nvidia-cuda-cupti-cu12                         (!) 12.4.127   12.6.80  
nvidia-cuda-nvrtc-cu12                         (!) 12.4.127   12.6.85  
nvidia-cuda-runtime-cu12                       (!) 12.4.127   12.6.77  
nvidia-cudnn-cu12                              (!) 9.1.0.70   9.6.0.74 
nvidia-cufft-cu12                              (!) 11.2.1.3   11.3.0.4 
nvidia-curand-cu12                             (!) 10.3.5.147 10.3.7.77
nvidia-cusolver-cu12                           (!) 11.6.1.9   11.7.1.2 
nvidia-cusparse-cu12                           (!) 12.3.1.170 12.5.4.2 
nvidia-nccl-cu12                               (!) 2.21.5     2.24.3   
nvidia-nvjitlink-cu12                          (!) 12.4.127   12.6.85  
nvidia-nvtx-cu12                               (!) 12.4.127   12.6.77  
pooch                                          (!) 1.8.0      1.8.2    
pydantic                                           2.8.2      2.10.4   
pydantic-core                                      2.20.1     2.27.2   
pytest                                         (!) 7.4.4      8.3.4    
stack-data                                     (!) 0.5.1      0.6.3    
stackview                                      (!) 0.8.2      0.12.1   
sympy                                          (!) 1.13.1     1.13.3   
zarr                                               2.18.3     2.18.4   

Note: there may be dependencies in the table above which were not updated as part of this PR.
The reason is they require manual updating due to the way they are pinned.

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Coverage report

This PR does not seem to contain any modification to coverable code.

@tcompa tcompa marked this pull request as ready for review January 8, 2025 13:22
@tcompa tcompa merged commit 5c5ccaf into main Jan 8, 2025
20 checks passed
@tcompa tcompa deleted the poetry-update branch January 8, 2025 15:17
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