Merge pull request #253 from flatironinstitute/update/stan-2.36.0

Update Stan to 2.36.0
flatironinstitute · Dec 18, 2024 · f4c4684 · f4c4684
2 parents 88e056c + 939712b
commit f4c4684
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diff --git a/.github/workflows/docker_deploy.yml b/.github/workflows/docker_deploy.yml
@@ -0,0 +1,39 @@
+name: Docker image deploy
+
+on:
+  push:
+    branches:
+      - main
+    paths:
+      - "backend/**"
+  workflow_dispatch:
+    inputs:
+      tag:
+        description: 'Docker image tag'
+        required: true
+        default: 'latest'
+
+jobs:
+  docker-deploy:
+    name: Docker deploy
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v4
+
+      - name: Set up Docker Builder
+        uses: docker/setup-buildx-action@v3
+
+      - name: Log in to GitHub Container Registry
+        uses: docker/login-action@v3
+        with:
+          registry: ghcr.io
+          username: ${{ github.actor }}
+          password: ${{ secrets.GITHUB_TOKEN }}
+
+      - name: Build and push
+        run: |
+          cd backend/
+          INPUT_TAG=${{ github.event.inputs.tag }}
+          TAG=${INPUT_TAG:-"latest"}
+          docker build -t ghcr.io/flatironinstitute/stan-wasm-server:$TAG .
+          docker push ghcr.io/flatironinstitute/stan-wasm-server:$TAG
diff --git a/.github/workflows/vercel_deploy.yml b/.github/workflows/vercel_deploy.yml
@@ -4,7 +4,6 @@ on:
   push:
     branches:
       - main
-      - vercel-deploy-2  # for initial test
   # manual trigger
   workflow_dispatch:
 
@@ -13,24 +12,19 @@ jobs:
     name: Vercel deploy
     runs-on: ubuntu-latest
     steps:
-        - uses: actions/checkout@v2
-        -
-            name: Install Vercel CLI
-            run: npm install --global vercel@latest
-        -
-            name: Create .vercel/project.json
-            run: |
-              cd gui
-              mkdir -p .vercel
-              echo '{"projectId":"${{ secrets.VERCEL_PROJECT_ID }}", "orgId":"${{ secrets.VERCEL_ORG_ID }}"}' > .vercel/project.json
-        -
-            name: Pull Vercel Environment Information
-            run: |
-              cd gui
-              vercel pull --yes --environment=production --token=${{ secrets.VERCEL_TOKEN }}
-        -
-            name: Build Project Artifacts
-            run: |
-              cd gui
-              vercel --prod --token=${{ secrets.VERCEL_TOKEN }}
-
+      - uses: actions/checkout@v4
+      - name: Install Vercel CLI
+        run: npm install --global vercel@latest
+      - name: Create .vercel/project.json
+        run: |
+          cd gui
+          mkdir -p .vercel
+          echo '{"projectId":"${{ secrets.VERCEL_PROJECT_ID }}", "orgId":"${{ secrets.VERCEL_ORG_ID }}"}' > .vercel/project.json
+      - name: Pull Vercel Environment Information
+        run: |
+          cd gui
+          vercel pull --yes --environment=production --token=${{ secrets.VERCEL_TOKEN }}
+      - name: Build Project Artifacts
+        run: |
+          cd gui
+          vercel --prod --token=${{ secrets.VERCEL_TOKEN }}
diff --git a/backend/Dockerfile b/backend/Dockerfile
@@ -1,5 +1,5 @@
 # Dockerfile
-FROM emscripten/emsdk:3.1.59 AS builder
+FROM emscripten/emsdk:3.1.73 AS builder
 
 # Set the working directory
 WORKDIR /app
@@ -13,7 +13,7 @@ RUN apt-get update && apt-get install -y \
     tar
 
 # Clone the oneTBB library and checkout the specific commit
-RUN wget https://github.com/oneapi-src/oneTBB/archive/refs/tags/v2021.13.0.tar.gz && \
+RUN wget https://github.com/uxlfoundation/oneTBB/archive/refs/tags/v2021.13.0.tar.gz && \
     tar -xvf v2021.13.0.tar.gz && \
     mv oneTBB-2021.13.0 oneTBB
 
@@ -40,7 +40,7 @@ RUN pip install uvicorn
 # Clone the TinyStan repository and checkout a specific commit
 RUN git clone https://github.com/WardBrian/tinystan.git && \
     cd tinystan && \
-    git checkout "e1e675ea21873e3365bb0d54a843f4c0f54bf6a8" && \
+    git checkout "28e4156837260d8e752dfc50c00fbe2409236c11" && \
     git submodule update --init --recursive
 
 # Copy the local configuration file for TinyStan

diff --git a/backend/build_and_push.sh b/backend/build_and_push.sh
diff --git a/docs/compilation_server_setup.md b/docs/compilation_server_setup.md
@@ -5,7 +5,7 @@ These instructions are only required if you want to set up your own compilation
 To run your own server locally using Docker, execute the following command:
 
 ```
-docker run -p 8083:8080 -it magland/stan-wasm-server:latest
+docker run -p 8083:8080 -it ghcr.io/flatironinstitute/stan-wasm-server:latest
 ```
 
 After setting up the server, navigate to https://stan-playground.flatironinstitute.org.

diff --git a/gui/src/app/Compilation/Control/CompilationServerDialog.tsx b/gui/src/app/Compilation/Control/CompilationServerDialog.tsx
@@ -113,7 +113,8 @@ const ConfigureCompilationServerDialog: FunctionComponent<
           </p>
           <div>
             <pre>
-              docker run -p 8083:8080 -it magland/stan-wasm-server:latest
+              docker run -p 8083:8080 -it
+              ghcr.io/flatironinstitute/stan-wasm-server:latest
             </pre>
           </div>
         </div>

diff --git a/gui/src/app/Stanc/stanc.js b/gui/src/app/Stanc/stanc.js
-Original file line number
+Diff line change
@@ Expand Up / @@ -113,7 +113,8 @@ const ConfigureCompilationServerDialog: FunctionComponent< @@
               </p>
               <div>
                 <pre>
-                  docker run -p 8083:8080 -it magland/stan-wasm-server:latest
+                  docker run -p 8083:8080 -it
+                  ghcr.io/flatironinstitute/stan-wasm-server:latest
                 </pre>
               </div>
             </div>
@@ Expand Down @@