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Multitask multigene#65

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asistradition merged 20 commits intoreleaseflatironinstitute/inferelator:releasefrom multitask_multigeneflatironinstitute/inferelator:multitask_multigeneCopy head branch name to clipboardJul 8, 2024

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Commits

Commits on May 8, 2023

• Update AnnData

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Commits on Jun 21, 2023

• Shortcut function for vprint

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• Change deprecated nprocs command

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Commits on Jun 28, 2023

• LASSO returns selected alpha

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Commits on Jun 30, 2023

• Update grnboost/genie benchmark stub

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Commits on Jul 3, 2023

• Model file parameterization

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Commits on Jul 5, 2023

• Add TruncRobustScaler

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Commits on Aug 15, 2023

• Allow passing a h5ad object directly into the constructor

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• v0.6.3

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Commits on Nov 15, 2023

• Modify regression test

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• readthedocs yaml

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Commits on May 3, 2024

• remove setting ENVs during import

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Commits on Jul 2, 2024

• Partial code update to maintain forward compatibility with numpy/pandas/anndata/scipy

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• More code cleanup

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Commits on Jul 8, 2024

• Finish cleanup for numpy 2

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• v0.6.3 numpy2 scipy1.14 fixes

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• Merge branch 'release' into multitask_multigene

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• Change todense to toarray

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• Merge branch 'multitask_multigene' of github.com:flatironinstitute/inferelator into multitask_multigene

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• Finalize scipy sparse fixes

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