Code

dev to main for release 1.11.2#1379

Code

Merged

pgunn merged 33 commits intomainflatironinstitute/CaImAn:mainfrom devflatironinstitute/CaImAn:devCopy head branch name to clipboardJul 25, 2024

+1,005-693

Commits

Commits on May 31, 2024

• VERSION to 1.11.2 after release

  pgunn

  authored
  398c64f

Commits on Jun 11, 2024

• Add is3D setting to summary_images functions

  ethanbb

  committed
  e401f75

Commits on Jun 13, 2024

• Make movie.removeBL work with 3D movies

  ethanbb

  committed
  af09876

Commits on Jun 14, 2024

• Revert "Add is3D setting to summary_images functions"

  Show description for d139588
  ethanbb

  committed
  d139588

• Add tests for to2D and to3D

  ethanbb

  committed
  0857d7a

Commits on Jun 16, 2024

• Make cpp exclusion more specific

  ethanbb

  committed
  7e372b3

Commits on Jun 17, 2024

• added bokeh implementation of view_quilt

  salehtahini

  committed
  860e8d8

Commits on Jun 18, 2024

• updated documentation

  salehtahini

  committed
  827c541

Commits on Jul 1, 2024

• Fix naming of Slider()

  pgunn

  committed
  54b2fb7

• Merge pull request #1365 from salehtahini/bokeh_view_quilt

  Show description for 90904b3
  pgunn

  authored
  90904b3

• pin peakutils >=1.3.5 (see #1369)

  pgunn

  committed
  9c4646e

Commits on Jul 2, 2024

• Fix CoM calculation when swap_dim is true

  ethanbb

  committed
  522d456

• Fix plot_contours to use CoMs from updated get_contours

  ethanbb

  committed
  1f88e49

• de-emoji the readme

  pgunn

  committed
  8f359bb

• Add rewritten com function with C/F order and add test

  ethanbb

  committed
  b38f0fa

• caiman_gui: if the user doesn't provide a filename, bail out with a good message rather than crashing

  pgunn

  committed
  f6d30aa

Commits on Jul 5, 2024

• Restore individual dimension arguments for com

  ethanbb

  committed
  467c591

• Add slice_dim option for get_contours and 3D test for swap_dim

  ethanbb

  committed
  d883598

• Minor changes to make contours more consistent/predictable

  ethanbb

  committed
  830967c

Commits on Jul 8, 2024

• Use None instead of 'auto'

  ethanbb

  committed
  04d1ca2

Commits on Jul 9, 2024

• Merge pull request #1370 from proektlab/contours-com-fix

  Show description for d219783
  pgunn

  authored
  d219783

Commits on Jul 11, 2024

• demo_online_cnmfE: Fix a text cell that was mistakenly marked as code

  pgunn

  committed
  d0732cb

Commits on Jul 12, 2024

• Finish the fix started in #1326 (thanks to @EmeEmu and @marberi for bringing it to my attention)

  pgunn

  committed
  2a9d2c8

Commits on Jul 18, 2024

• mmapping: fix a path goof where a double-correction caused a problem, thanks t o @nick-youngblut #1373

  pgunn

  committed
  2d0108e

• Merge pull request #1375 from flatironinstitute/dev-fix_path_goof

  Show description for bf7e8de
  pgunn

  authored
  bf7e8de

Commits on Jul 24, 2024

• Merge pull request #1363 from proektlab/summary-images-3d

  Show description for 0dac913
  pgunn

  authored
  0dac913

• Move (almost) all caiman logging under a named logger called "caiman"

  pgunn

  committed
  c82e768

• caiman-logger: Further cleanups, fix problems CI revealed

  pgunn

  committed
  9bdbacb

• caiman logging change: had to partly back off on import cleanup, fix some goofs

  pgunn

  committed
  b3fafb5

• Initial go at updating notebooks to use the logger we're calling caiman

  pgunn

  committed
  d3a89fc

Commits on Jul 25, 2024

• logging change diffset: Fixing a missed line in the mass cut'n'paste I did to notebooks

  pgunn

  committed
  268e807

• Logging cleanup diffset: Get rid of almost all calls to global logger

  pgunn

  committed
  04a04ae

• Merge pull request #1378 from flatironinstitute/dev-logging_cleanup

  Show description for e8abf3b
  pgunn

  authored
  e8abf3b