Fix transaction suite generated Condition resource

lib/resource_generator.rb

@@ -206,7 +206,9 @@ def self.minimal_condition(system='http://snomed.info/sct',code='414915002',pati
           resource.subject.display = 'Patient'
         end
         resource.code = minimal_codeableconcept(system,code, namespace)
-        resource.verificationStatus = 'confirmed'
+        if namespace == 'FHIR::DSTU2'
+          resource.verificationStatus = 'confirmed'
+        end
         tag_metadata(resource)
       end
 
@@ -412,6 +414,19 @@ def self.apply_invariants!(resource)
           #   resource.targetReference = textonly_reference('ValueSet') 
           # end
         when FHIR::Condition
+          # con-3
+          verification_status_is_entered_in_error = resource&.verificationStatus&.coding&.include?('entered-in-error')
+          category_is_problem_list_item = resource&.category&.find {|e| e&.coding&.include?("problem-list-item")}
+          if (!verification_status_is_entered_in_error || !category_is_problem_list_item)
+            clinical_status_code = ['active', 'recurrence', 'relapse', 'inactive', 'remission', 'resolved'].sample
+            resource.clinicalStatus = minimal_codeableconcept('http://hl7.org/fhir/ValueSet/condition-clinical', clinical_status_code)
+          end
+
+          # con-5
+          if resource&.verificationStatus&.coding&.include?('entered-in-error')
+            resource.clinicalStatus = nil
+          end
+
           if resource.onsetAge
             resource.onsetAge.system = 'http://unitsofmeasure.org'
             resource.onsetAge.code = 'a'
@@ -1079,6 +1094,11 @@ def self.apply_invariants!(resource)
             resource.targetReference = textonly_reference('ValueSet', FHIR::STU3) 
           end
         when FHIR::STU3::Condition
+          # con-3
+          if resource.verificationStatus != 'entered-in-error'
+            resource.clinicalStatus = ['active', 'recurrence', 'inactive', 'remission', 'resolved'].sample
+          end
+
           if resource.onsetAge
             resource.onsetAge.system = 'http://unitsofmeasure.org'
             resource.onsetAge.code = 'a'

lib/tests/suites/transaction_test.rb

@@ -75,6 +75,8 @@ def teardown
         @condition0 = ResourceGenerator.minimal_condition('http://snomed.info/sct','414915002',patient0_id)
         @condition0.subject.reference = patient0_uri
 
+        ResourceGenerator.apply_invariants!(@condition0)
+
         @client.begin_transaction
         @client.add_transaction_request('POST',nil,@patient0).fullUrl = patient0_uri
         @client.add_transaction_request('POST',nil,@obs0a).fullUrl = "urn:uuid:#{SecureRandom.uuid}"
@@ -168,9 +170,14 @@ def teardown
         @obs2 = ResourceGenerator.minimal_observation('http://loinc.org','3141-9',100,'kg',@patient0.id)
         # obesity has been refuted
         @condition0.subject.reference = "Patient/#{@patient0.id}"
-        @condition0.clinicalStatus = 'resolved'
-        @condition0.verificationStatus = 'refuted'
         @condition0.abatementString = 'Abated at unknown date'
+        if fhir_version() == :r4
+          @condition0.clinicalStatus = ResourceGenerator.minimal_codeableconcept('http://terminology.hl7.org/CodeSystem/condition-clinical', 'resolved')
+          @condition0.verificationStatus = ResourceGenerator.minimal_codeableconcept('http://terminology.hl7.org/CodeSystem/condition-ver-status', 'refuted')
+        else
+          @condition0.clinicalStatus = 'resolved'
+          @condition0.verificationStatus = 'refuted'
+        end
 
         @client.begin_transaction
         @client.add_transaction_request('DELETE',"Observation/#{@obs0b.id}") if @obs0b && [email protected]? # delete first weight
@@ -258,8 +265,9 @@ def teardown
         assert_bundle_response(reply)
         assert_bundle_transactions_okay(reply)
 
-        count = (reply.resource.entry.first.resource.total rescue 0)
-        assert(count==1,"In a transaction, GET should execute last and in this case only return 1 result; found #{count}",reply.body)
+        total = reply.resource.entry.first.resource.total
+        total = reply&.resource&.entry&.first&.resource&.entry&.count if total.nil?
+        assert(total==1,"In a transaction, GET should execute last and in this case only return 1 result; found #{total}",reply.body)
         searchResultId = (reply.resource.entry.first.resource.entry.first.resource.id rescue nil)
         assert([email protected],"The GET search returned the wrong result. Expected Observation/#{@obs0a.id} but found Observation/#{searchResultId}.",reply.body)