Make it so github timecourse data accumulates #63
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| # Candace Savonen Dec 2021 | |
| # Updated April 2023 | |
| name: Pull Request | |
| on: | |
| pull_request: | |
| branches: [ main, staging ] | |
| jobs: | |
| yaml-check: | |
| name: Load user automation choices | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| # Use the yaml-env-action action. | |
| - name: Load environment from YAML | |
| uses: doughepi/[email protected] | |
| with: | |
| files: _config_automation.yml # Pass a space-separated list of configuration files. Rightmost files take precedence. | |
| # Delete the branch if this has been run before | |
| - name: Delete branch locally and remotely | |
| run: git push origin --delete preview-${{ github.event.pull_request.number }} || echo "No branch to delete" | |
| # Make the branch fresh | |
| - name: Make the branch fresh | |
| run: | | |
| git config --local user.email "[email protected]" | |
| git config --local user.name "jhudsl-robot" | |
| branch_name='preview-${{ github.event.pull_request.number }}' | |
| echo branch doesnt exist | |
| git checkout -b $branch_name || echo branch exists | |
| git push --set-upstream origin $branch_name | |
| shell: bash | |
| outputs: | |
| public_repository: "${{ steps.public_repository.outputs.public }}" | |
| toggle_spell_check: "${{ env.SPELL_CHECK }}" | |
| toggle_url_check: "${{ env.URL_CHECKER }}" | |
| toggle_render_preview: "${{ env.RENDER_PREVIEW }}" | |
| rendering_docker_image: "${{ env.RENDERING_DOCKER_IMAGE }}" | |
| ########################## Make the error reports ############################## | |
| spell-check: | |
| name: Check spelling | |
| needs: yaml-check | |
| if: ${{needs.yaml-check.outputs.toggle_spell_check == 'yes'}} | |
| uses: jhudsl/ottr-reports/.github/workflows/report-maker.yml@main | |
| with: | |
| check_type: spelling | |
| error_min: 3 | |
| gh_pat: secrets.GH_PAT | |
| url-check: | |
| name: Check URLs | |
| needs: yaml-check | |
| if: ${{needs.yaml-check.outputs.toggle_url_check == 'yes'}} | |
| uses: jhudsl/ottr-reports/.github/workflows/report-maker.yml@main | |
| with: | |
| check_type: urls | |
| error_min: 0 | |
| gh_pat: secrets.GH_PAT | |
| render-preview: | |
| name: Render preview | |
| needs: yaml-check | |
| runs-on: ubuntu-latest | |
| container: | |
| image: jhudsl/course_template:main | |
| if: ${{needs.yaml-check.outputs.toggle_render_preview == 'yes'}} | |
| steps: | |
| - name: Checkout files | |
| uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| # Set up git checkout | |
| - name: Set up git checkout | |
| run: | | |
| git config --system --add safe.directory $GITHUB_WORKSPACE | |
| git config --local user.email "[email protected]" | |
| git config --local user.name "jhudsl-robot" | |
| branch_name='preview-${{ github.event.pull_request.number }}' | |
| git fetch --all | |
| git checkout $branch_name | |
| git merge -s recursive --strategy-option=theirs origin/${{ github.head_ref }} --allow-unrelated-histories | |
| shell: bash | |
| # We want a fresh run of the renders each time - so first delete old html files | |
| - name: Delete old *.html | |
| run: Rscript -e "rmarkdown::clean_site(preview = FALSE)" | |
| # Now we want to render all the html files from the Rmd files | |
| - name: Run render html | |
| id: site | |
| run: Rscript -e "rmarkdown::render_site()" | |
| # We may have html files that we want to render to add as links on the pages -these will be stored in a dir called subdir_html | |
| - name: Render subdir_html | |
| id: subdir_html | |
| run: Rscript -e "for (i in list.files(path = './subdir_html', pattern = 'Rmd$', recursive = TRUE, full.names = TRUE)){rmarkdown::render(i)}" | |
| # This checks on the steps before it and makes sure that they completed. | |
| # If the renders didn't complete we don't want to commit the file changes | |
| - name: Check on render steps | |
| if: steps.site.outcome != 'success' | |
| run: | | |
| echo site status ${{steps.site.outcome}} | |
| exit 1 | |
| # Commit the rendered website files | |
| - name: Commit rendered website files to preview branch | |
| id: commit | |
| run: | | |
| branch_name='preview-${{ github.event.pull_request.number }}' | |
| git diff origin/main -- '*.html' >/dev/null && changes=true || changes=false | |
| echo ::set-output name=changes::$changes | |
| git add . --force | |
| git commit -m 'Render preview' || echo "No changes to commit" | |
| git pull --set-upstream origin $branch_name --allow-unrelated-histories --strategy-option=ours | |
| git push --force || echo "No changes to commit" | |
| shell: bash | |
| - name: Find Comment | |
| uses: peter-evans/find-comment@v1 | |
| id: fc | |
| with: | |
| issue-number: ${{ github.event.pull_request.number }} | |
| comment-author: 'github-actions[bot]' | |
| body-includes: latest commit | |
| - name: Build components of the comment | |
| id: build-components | |
| run: | | |
| course_name=$(head -n 1 _website.yml | cut -d'"' -f 2| tr " " "-") | |
| website_link=$(echo "https://htmlpreview.github.io/?https://raw.githubusercontent.com/$GITHUB_REPOSITORY/preview-${{ github.event.pull_request.number }}/docs/index.html") | |
| echo ::set-output name=website_link::$website_link | |
| echo ::set-output name=time::$(date +'%Y-%m-%d') | |
| echo ::set-output name=commit_id::$GITHUB_SHA | |
| echo ${{steps.commit.outputs.changes}} | |
| - name: Create or update comment | |
| if: steps.commit.outputs.changes == 'true' | |
| uses: peter-evans/create-or-update-comment@v1 | |
| with: | |
| comment-id: ${{ steps.fc.outputs.comment-id }} | |
| issue-number: ${{ github.event.pull_request.number }} | |
| body: | | |
| Re-rendered previews from the latest commit: See [preview of website here](${{ steps.build-components.outputs.website_link }}) | |
| _Updated at ${{ steps.build-components.outputs.time }} with changes from ${{ steps.build-components.outputs.commit_id }}_ | |
| edit-mode: replace | |
| - name: No comment if no changes | |
| if: steps.commit.outputs.changes == 'false' | |
| uses: peter-evans/create-or-update-comment@v1 | |
| with: | |
| comment-id: ${{ steps.fc.outputs.comment-id }} | |
| issue-number: ${{ github.event.pull_request.number }} | |
| body: | | |
| The latest commit did not produce rendering changes. | |
| _Updated at ${{ steps.build-components.outputs.time }} with changes from ${{ steps.build-components.outputs.commit_id }}_ | |
| edit-mode: replace |