Putting instructions in Rmds #52
Workflow file for this run
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| # Candace Savonen Dec 2021 | |
| # Updated April 2023 | |
| name: Pull Request | |
| on: | |
| pull_request: | |
| branches: [ main, staging ] | |
| jobs: | |
| yaml-check: | |
| name: Load user automation choices | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| # Use the yaml-env-action action. | |
| - name: Load environment from YAML | |
| uses: doughepi/[email protected] | |
| with: | |
| files: _config_automation.yml # Pass a space-separated list of configuration files. Rightmost files take precedence. | |
| # Delete the branch if this has been run before | |
| - name: Delete branch locally and remotely | |
| run: git push origin --delete preview-${{ github.event.pull_request.number }} || echo "No branch to delete" | |
| # Make the branch fresh | |
| - name: Make the branch fresh | |
| run: | | |
| git config --local user.email "[email protected]" | |
| git config --local user.name "jhudsl-robot" | |
| branch_name='preview-${{ github.event.pull_request.number }}' | |
| echo branch doesnt exist | |
| git checkout -b $branch_name || echo branch exists | |
| git push --set-upstream origin $branch_name | |
| shell: bash | |
| outputs: | |
| public_repository: "${{ steps.public_repository.outputs.public }}" | |
| toggle_spell_check: "${{ env.SPELL_CHECK }}" | |
| toggle_url_check: "${{ env.URL_CHECKER }}" | |
| toggle_render_preview: "${{ env.RENDER_PREVIEW }}" | |
| rendering_docker_image: "${{ env.RENDERING_DOCKER_IMAGE }}" | |
| ########################## Make the error reports ############################## | |
| spell-check: | |
| name: Check spelling | |
| needs: yaml-check | |
| if: ${{needs.yaml-check.outputs.toggle_spell_check == 'yes'}} | |
| uses: jhudsl/ottr-reports/.github/workflows/report-maker.yml@main | |
| with: | |
| check_type: spelling | |
| error_min: 3 | |
| gh_pat: secrets.GH_PAT | |
| url-check: | |
| name: Check URLs | |
| needs: yaml-check | |
| if: ${{needs.yaml-check.outputs.toggle_url_check == 'yes'}} | |
| uses: jhudsl/ottr-reports/.github/workflows/report-maker.yml@main | |
| with: | |
| check_type: urls | |
| error_min: 0 | |
| gh_pat: secrets.GH_PAT | |
| render-preview: | |
| name: Render preview | |
| needs: yaml-check | |
| runs-on: ubuntu-latest | |
| container: | |
| image: jhudsl/course_template:main | |
| if: ${{needs.yaml-check.outputs.toggle_render_preview == 'yes'}} | |
| steps: | |
| - name: Checkout files | |
| uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| # Set up git checkout | |
| - name: Set up git checkout | |
| run: | | |
| git config --system --add safe.directory $GITHUB_WORKSPACE | |
| git config --local user.email "[email protected]" | |
| git config --local user.name "jhudsl-robot" | |
| branch_name='preview-${{ github.event.pull_request.number }}' | |
| git fetch --all | |
| git checkout $branch_name | |
| git merge -s recursive --strategy-option=theirs origin/${{ github.head_ref }} --allow-unrelated-histories | |
| shell: bash | |
| # We want a fresh run of the renders each time - so first delete old html files | |
| - name: Delete old *.html | |
| run: Rscript -e "rmarkdown::clean_site(preview = FALSE)" | |
| # Now we want to render all the html files from the Rmd files | |
| - name: Run render html | |
| id: site | |
| run: Rscript -e "rmarkdown::render_site()" | |
| # We may have html files that we want to render to add as links on the pages -these will be stored in a dir called subdir_html | |
| - name: Render subdir_html | |
| id: subdir_html | |
| run: Rscript -e "for (i in list.files(path = './subdir_html', pattern = 'Rmd$', recursive = TRUE, full.names = TRUE)){rmarkdown::render(i)}" | |
| # This checks on the steps before it and makes sure that they completed. | |
| # If the renders didn't complete we don't want to commit the file changes | |
| - name: Check on render steps | |
| if: steps.site.outcome != 'success' | |
| run: | | |
| echo site status ${{steps.site.outcome}} | |
| exit 1 | |
| # Commit the rendered website files | |
| - name: Commit rendered website files to preview branch | |
| id: commit | |
| run: | | |
| branch_name='preview-${{ github.event.pull_request.number }}' | |
| git diff origin/main -- '*.html' >/dev/null && changes=true || changes=false | |
| echo ::set-output name=changes::$changes | |
| git add . --force | |
| git commit -m 'Render preview' || echo "No changes to commit" | |
| git pull --set-upstream origin $branch_name --allow-unrelated-histories --strategy-option=ours | |
| git push --force || echo "No changes to commit" | |
| shell: bash | |
| - name: Find Comment | |
| uses: peter-evans/find-comment@v1 | |
| id: fc | |
| with: | |
| issue-number: ${{ github.event.pull_request.number }} | |
| comment-author: 'github-actions[bot]' | |
| body-includes: latest commit | |
| - name: Build components of the comment | |
| id: build-components | |
| run: | | |
| course_name=$(head -n 1 _website.yml | cut -d'"' -f 2| tr " " "-") | |
| website_link=$(echo "https://htmlpreview.github.io/?https://raw.githubusercontent.com/$GITHUB_REPOSITORY/preview-${{ github.event.pull_request.number }}/docs/index.html") | |
| echo ::set-output name=website_link::$website_link | |
| echo ::set-output name=time::$(date +'%Y-%m-%d') | |
| echo ::set-output name=commit_id::$GITHUB_SHA | |
| echo ${{steps.commit.outputs.changes}} | |
| - name: Create or update comment | |
| if: steps.commit.outputs.changes == 'true' | |
| uses: peter-evans/create-or-update-comment@v1 | |
| with: | |
| comment-id: ${{ steps.fc.outputs.comment-id }} | |
| issue-number: ${{ github.event.pull_request.number }} | |
| body: | | |
| Re-rendered previews from the latest commit: See [preview of website here](${{ steps.build-components.outputs.website_link }}) | |
| _Updated at ${{ steps.build-components.outputs.time }} with changes from ${{ steps.build-components.outputs.commit_id }}_ | |
| edit-mode: replace | |
| - name: No comment if no changes | |
| if: steps.commit.outputs.changes == 'false' | |
| uses: peter-evans/create-or-update-comment@v1 | |
| with: | |
| comment-id: ${{ steps.fc.outputs.comment-id }} | |
| issue-number: ${{ github.event.pull_request.number }} | |
| body: | | |
| The latest commit did not produce rendering changes. | |
| _Updated at ${{ steps.build-components.outputs.time }} with changes from ${{ steps.build-components.outputs.commit_id }}_ | |
| edit-mode: replace |