idc-index release manager #5
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| name: idc-index release manager | |
| on: | |
| workflow_dispatch: | |
| schedule: | |
| - cron: 0 12 */1 * * | |
| jobs: | |
| update_idc_index: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v4 | |
| - name: Set up Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: 3.11 | |
| - name: Install dependencies | |
| run: pip install requests==2.31.0 pandas==2.1.1 google-cloud-bigquery==3.12.0 pyarrow==13.0.0 db-dtypes==1.1.1 PyGithub==2.1.1 | |
| - name: Authorize Google Cloud | |
| uses: google-github-actions/auth@v1 | |
| with: | |
| credentials_json: ${{ secrets.SERVICE_ACCOUNT_KEY }} | |
| create_credentials_file: true | |
| export_environment_variables: true | |
| - name: Run script to get the latest idc index | |
| id: initialize_idc_manager_class | |
| shell: python | |
| run: | | |
| import sys | |
| import os | |
| sys.path.append(".github") | |
| from get_latest_index import IDCIndexManager | |
| project_id = os.environ['GCP_PROJECT_ID'] | |
| manager = IDCIndexManager(project_id) | |
| current_index_version = manager.extract_index_version("idc_index/index.py") | |
| latest_idc_release_version = manager.get_latest_idc_release_version("bigquery-public-data.idc_current.dicom_all_view") | |
| if current_index_version < latest_idc_release_version: | |
| manager.update_index_version("idc_index/index.py", latest_idc_release_version) | |
| manager.update_sql_queries_folder("queries/", current_index_version, latest_idc_release_version) | |
| manager.run_queries_folder("queries/") | |
| manager.set_multiline_output("current_index_version", int(current_index_version)) | |
| manager.set_multiline_output("latest_idc_release_version", int(latest_idc_release_version)) | |
| env: | |
| GCP_PROJECT_ID: ${{ secrets.GCP_PROJECT_ID }} | |
| - name: Update latest tag's source code | |
| if: ${{ steps.initialize_idc_manager_class.outputs.current_index_version != steps.initialize_idc_manager_class.outputs.latest_idc_release_version }} | |
| uses: richardsimko/update-tag@v1 | |
| with: | |
| tag_name: latest | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Create latest Release | |
| if: ${{ steps.initialize_idc_manager_class.outputs.current_index_version != steps.initialize_idc_manager_class.outputs.latest_idc_release_version }} | |
| uses: crowbarmaster/GH-Automatic-Releases@latest | |
| with: | |
| repo_token: "${{ secrets.GITHUB_TOKEN }}" | |
| automatic_release_tag: "latest" | |
| #generate_notes: false | |
| body: "Latest idc-index" | |
| prerelease: true | |
| title: "Latest idc-index" | |
| files: | | |
| *.zip | |
| - name: Create Pull Request | |
| uses: peter-evans/create-pull-request@v5 | |
| with: | |
| title: Update to v${{ steps.initialize_idc_manager_class.outputs.latest_idc_release_version }} | |
| body: Update sql queries and/or index.py to v${{ steps.initialize_idc_manager_class.outputs.latest_idc_release_version }} | |
| base: main | |
| branch: update-sql-queries-and-or-index | |
| add-paths: | | |
| queries/*.sql | |
| idc_index/index.py | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |