Validate Hub Configuration #29
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Validate Hub Configuration | |
| on: | |
| workflow_dispatch: | |
| jobs: | |
| validate-hub_config_job: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v3 | |
| - name: checkout data repo | |
| uses: actions/checkout@v3 | |
| with: | |
| token: ${{ secrets.GITHUB_TOKEN }} | |
| repository: 'european-modelling-hubs/RespiCompass' | |
| ref: 'main' | |
| path: './repo/' | |
| # TEST ONLY ----------------------------------- | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| install-r: false | |
| use-public-rspm: true | |
| - name: Install system dependencies | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install libcurl4-openssl-dev libv8-dev libudunits2-dev libgdal-dev | |
| # install test dep | |
| - uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| packages: hubverse-org/hubAdmin, any::sessioninfo | |
| # validate hub configurations | |
| - name: Run hub config validations | |
| run: | | |
| library("hubAdmin") | |
| v <- hubAdmin::validate_hub_config(hub_path = "./repo", schema_version = "latest") | |
| view_config_val_errors(v) | |
| shell: Rscript {0} | |
| - name: trace | |
| run: echo "Validation completed" |