Validate Hub Configuration #27
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name: Validate Hub Configuration | |
on: | |
workflow_dispatch: | |
jobs: | |
validate-hub_config_job: | |
runs-on: ubuntu-latest | |
steps: | |
- name: Checkout repository | |
uses: actions/checkout@v3 | |
- name: checkout data repo | |
uses: actions/checkout@v3 | |
with: | |
token: ${{ secrets.GITHUB_TOKEN }} | |
repository: 'european-modelling-hubs/RespiCompass' | |
ref: 'main' | |
path: './repo/' | |
# TEST ONLY ----------------------------------- | |
- uses: r-lib/actions/setup-r@v2 | |
with: | |
install-r: false | |
use-public-rspm: true | |
- name: Install system dependencies | |
run: | | |
sudo apt-get update | |
sudo apt-get install libcurl4-openssl-dev libv8-dev libudunits2-dev libgdal-dev | |
# install test dep | |
- uses: r-lib/actions/setup-r-dependencies@v2 | |
with: | |
packages: hubverse-org/hubAdmin, any::sessioninfo | |
# validate hub configurations | |
- name: Run hub config validations | |
run: | | |
library("hubAdmin") | |
v <- hubAdmin::validate_hub_config(hub_path = "./repo", schema_version = "latest") | |
view_config_val_errors(v) | |
shell: Rscript {0} | |
- name: trace | |
run: echo "Validation completed" |