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Merge latest developments from GEOMAR into release #1138
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Commits on Dec 6, 2022
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Commits on Dec 14, 2022
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started adding things for Tco399-ORCA12. Also add ln_single_prec_send…
… to runscript
shkjocke committedDec 14, 2022 Configuration menu - View commit details
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Merge branch 'geomar_dev' of https://github.com/esm-tools/esm_tools i…
…nto geomar_dev
shkjocke committedDec 14, 2022 Configuration menu - View commit details
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Commits on Dec 23, 2022
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oifs annual means was not working. Seems ok now.
shkjocke committedDec 23, 2022 Configuration menu - View commit details
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Commits on Jan 12, 2023
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Commits on Jan 18, 2023
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added runscript for spinup-1950 for foci-openifs
shkjocke committedJan 18, 2023 Configuration menu - View commit details
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shkjocke committed
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Commits on Jan 19, 2023
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Merge branch 'geomar_dev' of https://github.com/esm-tools/esm_tools i…
…nto geomar_dev
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Commits on Jan 25, 2023
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clean up focioifs and fix runoff for AGRIF
shkjocke committedJan 25, 2023 Configuration menu - View commit details
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FOCI-OpenIFS-VIKING10 works on glogin with proper runoff remapping
shkjocke committedJan 25, 2023 Configuration menu - View commit details
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Commits on Feb 10, 2023
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shkjocke committed
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Commits on Feb 22, 2023
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Commits on Feb 27, 2023
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first draft of eORCA025.z75.SI3, still crashes with diamond shape pat…
…terns of NaN during the first time step
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Commits on Feb 28, 2023
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Commits on Mar 2, 2023
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added nemo4.2 configuration that ran 3 years using JRA-55 forcing and…
… the v1.0.5 Levitus initial data
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Merge pull request #908 from esm-tools/feature/add-eORCA025-standalone
Feature/add eorca025 standalone
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Commits on Mar 6, 2023
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focioifs-3.0 compiles, won't run as now NEMO4.2 specific adjustments …
…have been made updated nemo4 example standalone runscripts.
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Commits on Mar 8, 2023
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add _nemo4 to compile settings for glogin
uncomment compiler_mpi in blogin.yaml again
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Commits on Mar 10, 2023
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change xml files for NEMO4, and add new OpenIFS dev branch for 3.0
shkjocke committedMar 10, 2023 Configuration menu - View commit details
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Merge branch 'feature/add-focioifs-3.0' of https://github.com/esm-too…
…ls/esm_tools into feature/add-focioifs-3.0
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Commits on Mar 21, 2023
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add gcc 9.3.0 to main module for compiling FOCI-OpenIFS on glogin
shkjocke committedMar 21, 2023 Configuration menu - View commit details
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Commits on Mar 24, 2023
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new script for generating OpenIFS initial conditions from GRIB output…
…. If all necessary fields are written in output, then this script can be used
shkjocke committedMar 24, 2023 Configuration menu - View commit details
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bug fix for oifs processing when running annual restarts
shkjocke committedMar 24, 2023 Configuration menu - View commit details
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add LNEMOLIMCUR to run with relative winds in FOCI-OIFS
shkjocke committedMar 24, 2023 Configuration menu - View commit details
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Commits on Mar 28, 2023
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first modifications for NEMO4 coupled to openIFS
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Merge pull request #928 from esm-tools/feature/add-focioifs-3.0
Feature/add focioifs 3.0
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Merge pull request #929 from esm-tools/release
merge the latest release into geomar_dev
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Commits on Apr 26, 2023
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add abrupt 4xCO2 scenario to oifs.yaml. Also add runscript to branch …
…off historical and 4xCO2 experiments from FOCI-OpenIFS control
shkjocke committedApr 26, 2023 Configuration menu - View commit details
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Commits on May 10, 2023
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added eoptmized nodes for glogin
shkjocke committedMay 10, 2023 Configuration menu - View commit details
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Commits on May 11, 2023
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fix for branch-off experiments with eternal restarts in OpenIFS. Now …
…set ini_pseudo_initial_date in runscript for restart. Also, fix for 1pctCO2 which was not working before.
shkjocke committedMay 11, 2023 Configuration menu - View commit details
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Commits on Jun 6, 2023
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openifs runs on NESH, but post fails with git exec error
Joakim Kjellsson committedJun 6, 2023 Configuration menu - View commit details
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Commits on Jun 14, 2023
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oifs-43r3-v2 is now based on branch foci211. Also fixed postprocessin…
…g for AMIP runs
Joakim Kjellsson committedJun 14, 2023 Configuration menu - View commit details
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Commits on Jun 19, 2023
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Joakim Kjellsson committed
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Commits on Jun 20, 2023
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add orbital parameters to climMEMODEL runscript
Joakim Kjellsson committedJun 20, 2023 Configuration menu - View commit details
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Commits on Jun 26, 2023
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Merge pull request #983 from esm-tools/release
update geomar_dev with latest release
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module load git git-lfs on nesh
Joakim Kjellsson committedJun 26, 2023 Configuration menu - View commit details
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Merge branch 'geomar_dev' of https://github.com/esm-tools/esm_tools i…
…nto geomar_dev
Joakim Kjellsson committedJun 26, 2023 Configuration menu - View commit details
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Commits on Aug 21, 2023
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set ini_pseudo_initial_date in case not already set
shkjocke committedAug 21, 2023 Configuration menu - View commit details
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add L75 option. Also add Calving mask for AGRIF, e.g. ORION10
shkjocke committedAug 21, 2023 Configuration menu - View commit details
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add Intel 2022 / IMPI 2021 as compile option on glogin. The older, In…
…tel 2019, stopped working
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add settings for calving on AGRIF, and also Tco319-ORCA12 config. Als…
…o set default compiler on glogin to Intel 2022/IMPI 2021
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runscript to run Tco319-ORCA12 on glogin. Works, but slower than Tco9…
…5 version. Likely due to high I/O from XIOS
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Merge branch 'geomar_dev' of https://github.com/esm-tools/esm_tools i…
…nto geomar_dev
shkjocke committedAug 21, 2023 Configuration menu - View commit details
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Commits on Sep 1, 2023
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update IO_LIB_ROOT for Intel 2022 compilers on glogin
shkjocke committedSep 1, 2023 Configuration menu - View commit details
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New Intel compilers (2022 and beyond) do not accept -mkl=sequential a…
…nymore. Replace by -qmkl=sequential, which should work on any new-ish versions.
shkjocke committedSep 1, 2023 Configuration menu - View commit details
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fix so that clean command also removed BLD and arch_nemo.fcm for NEMO.
shkjocke committedSep 1, 2023 Configuration menu - View commit details
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fixed so that month 08 is no longer interpreted as an octal number. S…
…hould only impact names of postprocessed OpenIFS output.
shkjocke committedSep 1, 2023 Configuration menu - View commit details
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Commits on Sep 8, 2023
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add OpenIFS output on theta levels to oifs_postprocessing.sh
shkjocke committedSep 8, 2023 Configuration menu - View commit details
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Commits on Oct 11, 2023
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bugfix so that nemo post script works for monthly restarts properly. …
…08 was being interpreted as octal numbers...
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Commits on Oct 20, 2023
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make new version: FOCI-OpenIFS 2.2 with new switches to use 1st order…
… conserv remapping with oasis
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we can now choose conserv (1st order) or gauswgt for atm-agrif remapp…
…ing. conserv does not work though
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Commits on Dec 4, 2023
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Merge pull request #1101 from esm-tools/feature/oasis_from_cerfacs
Feature/oasis from cerfacs
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add variable oasis_p to control if we set P 2 (for NEMO 3.6) or P 0 (…
…for NEMO 4) in namcouple file. This controls if periodic points are included in the coupling fields or not
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add bilinear and bicubic remapping methods for FOCI-OpenIFS. This mea…
…ns we handle everything as bilinear but use bicubic for wind stress
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Commits on Dec 19, 2023
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change leapyear to true for ORCA05 coupled config with NEMO4. Warning…
…: If leapyear is false in NEMO coupled to OpenIFS, ESM-Tools and OASIS wont complain, but XIOS will throw strange errors after 3 years
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Merge pull request #1110 from esm-tools/focioifs3_busan
Focioifs3 busan
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Commits on Feb 7, 2024
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Merge pull request #1131 from esm-tools/focioifs3_busan
Focioifs3 busan
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added regular_pl_zoom output for OpenIFS, which is pressure-level out…
…put but only for 850, 500 and 300 hPa. Useful to output high-frequency fields while keeping data size down
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Commits on Feb 13, 2024
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added (I know it's the wrong branch)
- gauswght direct coupling for FOCI - a few missing runscripts - bugfix for JSBACH for hist runs
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removed -l from default shell interpreter, caused problems on HLRN
fix search pattern for restart file naming convention used with FOCI
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Merge pull request #1132 from esm-tools/feat/foci_mct4_smag
Feat/foci mct4 smag
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Commits on Feb 14, 2024
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revert the foci specific change in pattern as it otherwise fails
for focioifs agrif configurations
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Commits on Feb 15, 2024
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in case config["restart_in_sources"] are given explicitely
AND are not absolute paths as e.g in FOCI ini_parent_dir: "${general.ini_parent_dir}/oasis3mct/" restart_in_sources: sstocean_${parent_expid}_... we need to check for the full path as well btw it was a nightmare to track this down
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in case config["restart_in_sources"] are given explicitely
AND are not absolute paths as e.g in FOCI ini_parent_dir: "${general.ini_parent_dir}/oasis3mct/" restart_in_sources: sstocean_${parent_expid}_... we need to check for the full path as well btw it was a nightmare to track this down
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updated highresmip/focioifs-sp1950-agrif-glogin.yaml to be compatible…
… with updates from release
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introduce new versions for NEMO and remove some versions. Attempt to …
…reduce code duplication
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turn of -g -traceback for OpenIFS and switch from -O1 to -O3 on glogi…
…n. Tco95 on 288 cores went from 80 min per year to 60min
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add comment for sclct_switch in oifs.yaml. And set 1800s to default t…
…ime step for Tco95
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rename focioifs versions and add comments. Also move lots of paramete…
…rs (sclct_switch, o3_scheme, coupling_time_step, etc) from runscripts to focioifs.yaml to make sure they are set by default. Still need to test all the new versions.
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add new couplings with more reasonable names. One for 3.0 (with MCT5)…
…, one for agrif and one for non-agrif twin.
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I dont think the choose statement in xios.yaml is needed. It just sea…
…rches for *.xml anyway
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Commits on Mar 6, 2024
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re-configure viscosity to properly scale from ORCA05. Note: Only need…
…s to be re-configured for each nest
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Commits on Mar 13, 2024
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Merge pull request #1143 from esm-tools/focioifs_correct_versions
Correcting version names for FOCI-OpenIFS
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Commits on Apr 18, 2024
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focioifs-agrif-4.0 compiles on glogin. Still need to add proper 1_nam…
…elist_cfg changes, input files etc
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Commits on Apr 19, 2024
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added OASIS_NETCDF and OASIS_NETCDFF for all machines (except old Mis…
…tral) to help with compiling OASIS3-MCT5 on both system libs and geomar libs
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Commits on Apr 23, 2024
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avoid duplicated add_namelist_changes in nemo.yaml. Also introduce us…
…e_si3 but use_lim2 remains default for back compatibility. Sorting out namelist changes for AGRIF in NEMO 4.2.2 but still not there I think
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switch to agrif branch of runoff mapper for focioifs-agrif-4.0. Also …
…correct names of coupling fields from AGRIF
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Commits on Apr 24, 2024
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first draft including MOPS with AGRIF
esm_master get-foci-agrif_mops_oasismct4 -c works
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Commits on Apr 26, 2024
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AGRIF-MOPS compiles and runs until it hits an error in trcsms_my_trc.F90
that is believed to be independent of ESM-Tools settings and rather related to the fact that we use direct coupling / OASISMCT4
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Merge pull request #1169 from esm-tools/feature/ibs_olaf
Feature/ibs olaf
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Commits on Jun 30, 2024
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finally got FOCI-OpenIFS-AGRIF 4.0 (NWPAC10) running on glogin (old n…
…odes). Not happy with NEMO parameter settings, but at least it runs
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we always choose the old nodes on glogin. No way to figure out the di…
…fference between phase 3 and older nodes
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Commits on Jul 25, 2024
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preliminary changes made to get FOCI work on blogin
running rocky linux 9 OASISMCT5 compiles but echam6 and xios r1910 still have issues
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Commits on Jul 30, 2024
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Upgrade oifs-43r3-v2 to use OASIS-MCT5 and XIOS trunk since older ver…
…sions struggle to compile on Intel 2023. Should not influence results in any way
shkjocke committedJul 30, 2024 Configuration menu - View commit details
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update environment changes for OpenIFS compilation on blogin with Int…
…el 2024. Some flags etc were no longer supported by the Intel compilers and some behind-the-scenes defaults have changed
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set new default compilers for Intel
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fixes to compile FOCI-OpenIFS on blogin. Must change in arch files to…
… use cpp rather than mpiicc as preprocessor
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focioifs now compiles with both intel+intelmpi and intel+openmpi. but…
… does not run with either... :-(
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Commits on Aug 7, 2024
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new compiler_mpi=intel2021_impi2019 using spack on glogin. Still FOCI…
…-OpenIFS does not work. Likely that problem is with the system config and not the model or Intel MPI
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SUCCESS! FOCI-OpenIFS 3.0 now runs on glogin. Still unclear about FOC…
…I-OpenIFS 4.0 or FOCI. Had to downgrade netcdf modules (see comment in glogin.yaml) and switch from srun to mpirun. It seems that NEMO 4.2 requires xios_trunk but xios_trunk hangs at the last time step. So FOCI-OpenIFS 4.0 does not run. Will need more investigation.
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Merge pull request #1210 from esm-tools/feature/blogin-rockylinux9
Feature/blogin rockylinux9
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set default nest1: false, instead of no. focioifs.yaml needs to evalu…
…ate nest1 as true or false
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Commits on Sep 9, 2024
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added for echam export vars for oasis
changed for nemo from shlat 2 -> 0 nn_closea 1 -> 0 fixed bgc passive tracer definitions changed the coupling definitions -> oasis version 5.0, xios2.5 r1910 new compiler settings for intel2023_impi2021 (glogin specific with intel_oneapi, maybe this has to be done cleaner?) increased debug level some changes to the runscript yaml
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Merge branch 'geomar_dev' of https://github.com/esm-tools/esm_tools i…
…nto geomar_dev
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added missing IDEAL tracer definition for FOCI_AGRIF_MOPS configuration
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Added missing configuration for foci_mops
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Adapted runscripts to a pre final version -> further test necessary
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Merge remote-tracking branch 'origin/feature/mops_agrif_direct_coupli…
…ng' into geomar_dev merge Tronje's MOPS developments into geomar_dev
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make FOCI-MOPS work again after the merge of Tronjes and
Joakims developments, remove a few hardcoded paths
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Added a yaml file to restart ESM simulations with ssp scenarios from …
…2014 with FOCI-MOPS and added bugfixes to the config files.
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Merge branch 'geomar_dev' of https://github.com/esm-tools/esm_tools i…
…nto geomar_dev
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Added git to the modules. This is no more a standard librabry since t…
…he update.
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