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Merge latest developments from GEOMAR into release #1138

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Commits on Dec 6, 2022

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Commits on Dec 12, 2022

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Commits on Dec 13, 2022

  1. fix leap year settings

    seb-wahl committed Dec 13, 2022
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Commits on Dec 14, 2022

  1. started adding things for Tco399-ORCA12. Also add ln_single_prec_send…

    … to runscript
    shkjocke committed Dec 14, 2022
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  2. Merge branch 'geomar_dev' of https://github.com/esm-tools/esm_tools i…

    …nto geomar_dev
    shkjocke committed Dec 14, 2022
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Commits on Dec 23, 2022

  1. oifs annual means was not working. Seems ok now.

    shkjocke committed Dec 23, 2022
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Commits on Jan 12, 2023

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Commits on Jan 18, 2023

  1. added runscript for spinup-1950 for foci-openifs

    shkjocke committed Jan 18, 2023
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  2. fix small conflict

    shkjocke committed Jan 18, 2023
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Commits on Jan 19, 2023

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Commits on Jan 25, 2023

  1. clean up focioifs and fix runoff for AGRIF

    shkjocke committed Jan 25, 2023
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Commits on Feb 10, 2023

  1. add settings for ORION10X

    shkjocke committed Feb 10, 2023
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Commits on Feb 22, 2023

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Commits on Feb 27, 2023

  1. first draft of eORCA025.z75.SI3, still crashes with diamond shape pat…

    …terns of NaN
    
    during the first time step
    seb-wahl committed Feb 27, 2023
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Commits on Feb 28, 2023

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Commits on Mar 2, 2023

  1. added nemo4.2 configuration that ran 3 years using JRA-55 forcing and…

    … the v1.0.5 Levitus initial data
    seb-wahl committed Mar 2, 2023
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  4. Merge pull request #908 from esm-tools/feature/add-eORCA025-standalone

    Feature/add eorca025 standalone
    seb-wahl authored Mar 2, 2023
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  5. remove set -vx

    seb-wahl committed Mar 2, 2023
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Commits on Mar 6, 2023

  1. focioifs-3.0 compiles, won't run as now NEMO4.2 specific adjustments …

    …have been made
    
    updated nemo4 example standalone runscripts.
    seb-wahl committed Mar 6, 2023
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Commits on Mar 8, 2023

  1. add _nemo4 to compile settings for glogin

    uncomment compiler_mpi in blogin.yaml again
    seb-wahl committed Mar 8, 2023
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  2. fix a typo in blogin.yaml

    seb-wahl committed Mar 8, 2023
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  3. add TCO95_eORCA025 switch

    seb-wahl committed Mar 8, 2023
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Commits on Mar 10, 2023

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  2. Merge branch 'feature/add-focioifs-3.0' of https://github.com/esm-too…

    …ls/esm_tools into feature/add-focioifs-3.0
    shkjocke committed Mar 10, 2023
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Commits on Mar 21, 2023

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Commits on Mar 24, 2023

  1. new script for generating OpenIFS initial conditions from GRIB output…

    …. If all necessary fields are written in output, then this script can be used
    shkjocke committed Mar 24, 2023
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Commits on Mar 28, 2023

  1. fixed modules for NEMO4

    first modifications for NEMO4 coupled to openIFS
    seb-wahl committed Mar 28, 2023
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  3. Merge pull request #928 from esm-tools/feature/add-focioifs-3.0

    Feature/add focioifs 3.0
    seb-wahl authored Mar 28, 2023
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  4. Merge pull request #929 from esm-tools/release

    merge the latest release into geomar_dev
    seb-wahl authored Mar 28, 2023
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Commits on Apr 26, 2023

  1. add abrupt 4xCO2 scenario to oifs.yaml. Also add runscript to branch …

    …off historical and 4xCO2 experiments from FOCI-OpenIFS control
    shkjocke committed Apr 26, 2023
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Commits on May 10, 2023

  1. added eoptmized nodes for glogin

    shkjocke committed May 10, 2023
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Commits on May 11, 2023

  1. fix for branch-off experiments with eternal restarts in OpenIFS. Now …

    …set ini_pseudo_initial_date in runscript for restart. Also, fix for 1pctCO2 which was not working before.
    shkjocke committed May 11, 2023
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Commits on Jun 6, 2023

  1. openifs runs on NESH, but post fails with git exec error

    Joakim Kjellsson committed Jun 6, 2023
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Commits on Jun 14, 2023

  1. oifs-43r3-v2 is now based on branch foci211. Also fixed postprocessin…

    …g for AMIP runs
    Joakim Kjellsson committed Jun 14, 2023
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Commits on Jun 19, 2023

  1. new xml files

    Joakim Kjellsson committed Jun 19, 2023
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Commits on Jun 20, 2023

  1. add orbital parameters to climMEMODEL runscript

    Joakim Kjellsson committed Jun 20, 2023
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Commits on Jun 26, 2023

  1. Merge pull request #983 from esm-tools/release

    update geomar_dev with latest release
    seb-wahl authored Jun 26, 2023
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  2. module load git git-lfs on nesh

    Joakim Kjellsson committed Jun 26, 2023
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  3. Merge branch 'geomar_dev' of https://github.com/esm-tools/esm_tools i…

    …nto geomar_dev
    Joakim Kjellsson committed Jun 26, 2023
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Commits on Aug 21, 2023

  1. set ini_pseudo_initial_date in case not already set

    shkjocke committed Aug 21, 2023
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  3. add Intel 2022 / IMPI 2021 as compile option on glogin. The older, In…

    …tel 2019, stopped working
    shkjocke committed Aug 21, 2023
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  4. add settings for calving on AGRIF, and also Tco319-ORCA12 config. Als…

    …o set default compiler on glogin to Intel 2022/IMPI 2021
    shkjocke committed Aug 21, 2023
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  5. runscript to run Tco319-ORCA12 on glogin. Works, but slower than Tco9…

    …5 version. Likely due to high I/O from XIOS
    shkjocke committed Aug 21, 2023
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  6. Merge branch 'geomar_dev' of https://github.com/esm-tools/esm_tools i…

    …nto geomar_dev
    shkjocke committed Aug 21, 2023
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Commits on Sep 1, 2023

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  2. New Intel compilers (2022 and beyond) do not accept -mkl=sequential a…

    …nymore. Replace by -qmkl=sequential, which should work on any new-ish versions.
    shkjocke committed Sep 1, 2023
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  4. fixed so that month 08 is no longer interpreted as an octal number. S…

    …hould only impact names of postprocessed OpenIFS output.
    shkjocke committed Sep 1, 2023
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Commits on Sep 8, 2023

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Commits on Oct 11, 2023

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  3. bugfix so that nemo post script works for monthly restarts properly. …

    …08 was being interpreted as octal numbers...
    joakimkjellsson committed Oct 11, 2023
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Commits on Oct 20, 2023

  1. make new version: FOCI-OpenIFS 2.2 with new switches to use 1st order…

    … conserv remapping with oasis
    joakimkjellsson committed Oct 20, 2023
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Commits on Oct 23, 2023

  1. first draft of fs_oasismct4

    cleanup still required
    seb-wahl committed Oct 23, 2023
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Commits on Oct 24, 2023

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Commits on Nov 7, 2023

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Commits on Nov 20, 2023

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  2. we can now choose conserv (1st order) or gauswgt for atm-agrif remapp…

    …ing. conserv does not work though
    joakimkjellsson committed Nov 20, 2023
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Commits on Nov 23, 2023

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Commits on Dec 4, 2023

  1. Merge pull request #1101 from esm-tools/feature/oasis_from_cerfacs

    Feature/oasis from cerfacs
    joakimkjellsson authored Dec 4, 2023
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  2. add variable oasis_p to control if we set P 2 (for NEMO 3.6) or P 0 (…

    …for NEMO 4) in namcouple file. This controls if periodic points are included in the coupling fields or not
    joakimkjellsson committed Dec 4, 2023
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  5. add bilinear and bicubic remapping methods for FOCI-OpenIFS. This mea…

    …ns we handle everything as bilinear but use bicubic for wind stress
    joakimkjellsson committed Dec 4, 2023
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Commits on Dec 12, 2023

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Commits on Dec 19, 2023

  1. change leapyear to true for ORCA05 coupled config with NEMO4. Warning…

    …: If leapyear is false in NEMO coupled to OpenIFS, ESM-Tools and OASIS wont complain, but XIOS will throw strange errors after 3 years
    joakimkjellsson committed Dec 19, 2023
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  2. Merge pull request #1110 from esm-tools/focioifs3_busan

    Focioifs3 busan
    seb-wahl authored Dec 19, 2023
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Commits on Jan 29, 2024

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Commits on Jan 30, 2024

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Commits on Feb 2, 2024

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Commits on Feb 6, 2024

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Commits on Feb 7, 2024

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  2. added regular_pl_zoom output for OpenIFS, which is pressure-level out…

    …put but only for 850, 500 and 300 hPa. Useful to output high-frequency fields while keeping data size down
    joakimkjellsson committed Feb 7, 2024
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Commits on Feb 13, 2024

  1. added (I know it's the wrong branch)

    - gauswght direct coupling for FOCI
    - a few missing runscripts
    - bugfix for JSBACH for hist runs
    seb-wahl committed Feb 13, 2024
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  2. removed -l from default shell interpreter, caused problems on HLRN

    fix search pattern for restart file naming convention used with FOCI
    seb-wahl committed Feb 13, 2024
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  3. Merge pull request #1132 from esm-tools/feat/foci_mct4_smag

    Feat/foci mct4 smag
    seb-wahl authored Feb 13, 2024
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Commits on Feb 14, 2024

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  2. revert the foci specific change in pattern as it otherwise fails

    for focioifs agrif configurations
    seb-wahl committed Feb 14, 2024
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Commits on Feb 15, 2024

  1. in case config["restart_in_sources"] are given explicitely

    AND are not absolute paths as e.g in FOCI
    ini_parent_dir: "${general.ini_parent_dir}/oasis3mct/"
        restart_in_sources: sstocean_${parent_expid}_...
    we need to check for the full path as well
    btw it was a nightmare to track this down
    seb-wahl committed Feb 15, 2024
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  2. in case config["restart_in_sources"] are given explicitely

    AND are not absolute paths as e.g in FOCI
    ini_parent_dir: "${general.ini_parent_dir}/oasis3mct/"
        restart_in_sources: sstocean_${parent_expid}_...
    we need to check for the full path as well
    btw it was a nightmare to track this down
    seb-wahl committed Feb 15, 2024
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  3. updated highresmip/focioifs-sp1950-agrif-glogin.yaml to be compatible…

    … with updates from release
    seb-wahl committed Feb 15, 2024
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Commits on Feb 16, 2024

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Commits on Feb 21, 2024

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Commits on Feb 23, 2024

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  2. added MOPS via direct coupling

    used for MO053D sochic extension
    seb-wahl committed Feb 23, 2024
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Commits on Mar 4, 2024

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  2. turn of -g -traceback for OpenIFS and switch from -O1 to -O3 on glogi…

    …n. Tco95 on 288 cores went from 80 min per year to 60min
    joakimkjellsson committed Mar 4, 2024
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  5. rename focioifs versions and add comments. Also move lots of paramete…

    …rs (sclct_switch, o3_scheme, coupling_time_step, etc) from runscripts to focioifs.yaml to make sure they are set by default. Still need to test all the new versions.
    joakimkjellsson committed Mar 4, 2024
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  7. add new couplings with more reasonable names. One for 3.0 (with MCT5)…

    …, one for agrif and one for non-agrif twin.
    joakimkjellsson committed Mar 4, 2024
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Commits on Mar 5, 2024

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Commits on Mar 6, 2024

  1. re-configure viscosity to properly scale from ORCA05. Note: Only need…

    …s to be re-configured for each nest
    joakimkjellsson committed Mar 6, 2024
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Commits on Mar 13, 2024

  1. Merge pull request #1143 from esm-tools/focioifs_correct_versions

    Correcting version names for FOCI-OpenIFS
    joakimkjellsson authored Mar 13, 2024
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Commits on Apr 16, 2024

  1. update paths on olaf

    joakimkjellsson committed Apr 16, 2024
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Commits on Apr 17, 2024

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Commits on Apr 18, 2024

  1. focioifs-agrif-4.0 compiles on glogin. Still need to add proper 1_nam…

    …elist_cfg changes, input files etc
    joakimkjellsson committed Apr 18, 2024
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Commits on Apr 19, 2024

  1. added OASIS_NETCDF and OASIS_NETCDFF for all machines (except old Mis…

    …tral) to help with compiling OASIS3-MCT5 on both system libs and geomar libs
    joakimkjellsson committed Apr 19, 2024
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Commits on Apr 23, 2024

  1. avoid duplicated add_namelist_changes in nemo.yaml. Also introduce us…

    …e_si3 but use_lim2 remains default for back compatibility. Sorting out namelist changes for AGRIF in NEMO 4.2.2 but still not there I think
    joakimkjellsson committed Apr 23, 2024
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  2. switch to agrif branch of runoff mapper for focioifs-agrif-4.0. Also …

    …correct names of coupling fields from AGRIF
    joakimkjellsson committed Apr 23, 2024
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Commits on Apr 24, 2024

  1. first draft including MOPS with AGRIF

    esm_master get-foci-agrif_mops_oasismct4 -c
    works
    seb-wahl committed Apr 24, 2024
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Commits on Apr 26, 2024

  1. AGRIF-MOPS compiles and runs until it hits an error in trcsms_my_trc.F90

    that is believed to be independent of ESM-Tools settings and rather related
    to the fact that we use direct coupling / OASISMCT4
    seb-wahl committed Apr 26, 2024
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Commits on Apr 29, 2024

  1. Merge pull request #1169 from esm-tools/feature/ibs_olaf

    Feature/ibs olaf
    joakimkjellsson authored Apr 29, 2024
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Commits on Jun 4, 2024

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Commits on Jun 30, 2024

  1. finally got FOCI-OpenIFS-AGRIF 4.0 (NWPAC10) running on glogin (old n…

    …odes). Not happy with NEMO parameter settings, but at least it runs
    joakimkjellsson committed Jun 30, 2024
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  3. we always choose the old nodes on glogin. No way to figure out the di…

    …fference between phase 3 and older nodes
    joakimkjellsson committed Jun 30, 2024
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Commits on Jul 5, 2024

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Commits on Jul 18, 2024

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Commits on Jul 19, 2024

  1. fixes for olaf

    joakimkjellsson committed Jul 19, 2024
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Commits on Jul 25, 2024

  1. preliminary changes made to get FOCI work on blogin

    running rocky linux 9
    OASISMCT5 compiles but echam6 and xios r1910 still have issues
    seb-wahl committed Jul 25, 2024
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Commits on Jul 30, 2024

  1. Upgrade oifs-43r3-v2 to use OASIS-MCT5 and XIOS trunk since older ver…

    …sions struggle to compile on Intel 2023. Should not influence results in any way
    shkjocke committed Jul 30, 2024
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  2. update environment changes for OpenIFS compilation on blogin with Int…

    …el 2024. Some flags etc were no longer supported by the Intel compilers and some behind-the-scenes defaults have changed
    shkjocke committed Jul 30, 2024
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  3. set new default compilers for Intel

    shkjocke committed Jul 30, 2024
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Commits on Aug 5, 2024

  1. fixes to compile FOCI-OpenIFS on blogin. Must change in arch files to…

    … use cpp rather than mpiicc as preprocessor
    shkjocke committed Aug 5, 2024
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  5. focioifs now compiles with both intel+intelmpi and intel+openmpi. but…

    … does not run with either... :-(
    joakimkjellsson committed Aug 5, 2024
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Commits on Aug 7, 2024

  1. new compiler_mpi=intel2021_impi2019 using spack on glogin. Still FOCI…

    …-OpenIFS does not work. Likely that problem is with the system config and not the model or Intel MPI
    joakimkjellsson committed Aug 7, 2024
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Commits on Aug 15, 2024

  1. SUCCESS! FOCI-OpenIFS 3.0 now runs on glogin. Still unclear about FOC…

    …I-OpenIFS 4.0 or FOCI. Had to downgrade netcdf modules (see comment in glogin.yaml) and switch from srun to mpirun. It seems that NEMO 4.2 requires xios_trunk but xios_trunk hangs at the last time step. So FOCI-OpenIFS 4.0 does not run. Will need more investigation.
    joakimkjellsson committed Aug 15, 2024
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Commits on Aug 29, 2024

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  4. Merge pull request #1210 from esm-tools/feature/blogin-rockylinux9

    Feature/blogin rockylinux9
    joakimkjellsson authored Aug 29, 2024
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Commits on Sep 3, 2024

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Commits on Sep 5, 2024

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Commits on Sep 9, 2024

  1. added for echam export vars for oasis

    changed for nemo from shlat 2 -> 0
    nn_closea 1 -> 0
    fixed bgc passive tracer definitions
    changed the coupling definitions -> oasis version 5.0, xios2.5 r1910
    new compiler settings for intel2023_impi2021 (glogin specific with intel_oneapi, maybe this has to be done cleaner?)
    increased debug level
    some changes to the runscript yaml
    GOESTERN-0687794 committed Sep 9, 2024
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Commits on Sep 11, 2024

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Commits on Sep 16, 2024

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  2. Added missing configuration for foci_mops

    GOESTERN-0687794 committed Sep 16, 2024
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Commits on Oct 7, 2024

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Commits on Oct 8, 2024

  1. Merge remote-tracking branch 'origin/feature/mops_agrif_direct_coupli…

    …ng' into geomar_dev
    
    merge Tronje's MOPS developments into geomar_dev
    seb-wahl committed Oct 8, 2024
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Commits on Oct 10, 2024

  1. make FOCI-MOPS work again after the merge of Tronjes and

    Joakims developments, remove a few hardcoded paths
    seb-wahl committed Oct 10, 2024
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Commits on Oct 14, 2024

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Commits on Oct 15, 2024

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Commits on Oct 16, 2024

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Commits on Nov 5, 2024

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Commits on Nov 6, 2024

  1. Added a yaml file to restart ESM simulations with ssp scenarios from …

    …2014 with FOCI-MOPS
    
    and added bugfixes to the config files.
    GOESTERN-0687794 committed Nov 6, 2024
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Commits on Nov 13, 2024

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Commits on Nov 19, 2024

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Commits on Nov 22, 2024

  1. Update oasis.py

    Bugfix bracket not closed
    TronjeKemena authored Nov 22, 2024
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Commits on Nov 25, 2024

  1. Added git to the modules. This is no more a standard librabry since t…

    …he update.
    GOESTERN-0687794 committed Nov 25, 2024
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