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JaroCamphuijsen authored Sep 9, 2024
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4 changes: 2 additions & 2 deletions .github/workflows/check.yml
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deploy_with_NEBULA:
permissions:
contents: write
uses: esciencecenter-digital-skills/NEBULA/.github/workflows/deploy.yml@v1.1.0
uses: esciencecenter-digital-skills/NEBULA/.github/workflows/deploy.yml@v1.2.0
with:
content_organization: ${{ github.repository_owner}}
content_repository: ${{ github.event.repository.name }}
content_ref: ${{ github.sha }}
nebula_ref: v1.1.0
nebula_ref: v1.2.1
deploy_to_ghpages: false
4 changes: 2 additions & 2 deletions .github/workflows/deploy.yml
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deploy_with_NEBULA:
permissions:
contents: write
uses: esciencecenter-digital-skills/NEBULA/.github/workflows/deploy.yml@v1.0.0
uses: esciencecenter-digital-skills/NEBULA/.github/workflows/deploy.yml@v1.2.0
with:
content_organization: ${{ github.repository_owner}}
content_repository: ${{ github.event.repository.name }}
content_ref: ${{ github.sha }}
nebula_ref: v1.1.0
nebula_ref: v1.2.1
deploy_to_ghpages: true
2 changes: 1 addition & 1 deletion config.json
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"repoName":"research-software-support",
"repoOwner": "esciencecenter-digital-skills",
"organization": "Netherlands eScience Center",
"categoryOrder": ["Getting started", "Reusability", "Publishing & Citing", "Development"]
"categoryOrder": ["Getting started", "Reusability", "Publishing & Citing", "Good Practices"]
}
}
29 changes: 29 additions & 0 deletions main/masterclass.md
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---
title: Masterclass
order: 3
---

## About
The Research Software Support Masterclass is the live workshop version of these online materials. If you are interested in following or even hosting such a masterclass, have a look at the [training page](https://www.esciencecenter.nl/digital-skills/) or contact the [training team](mailto:[email protected]) at the Netherlands eScience Center.

## Homework

### Research Software

1. Find a piece of research software that you like (because of the topic or nice picture, or whetever other reason) from the [Research Software Directory](https://research-software-directory.org/software?page=1&rows=48).

1. Do the [exercise about the research life cycle](/modules/researchsoftware/exercise-research-life-cycle) from the Research Software module, use the piece of software you chose.

### Software in the Research landscape

1. From all the different initiatives, concepts and organizations discussed in the [Software Landscape module](/modules/softwarelandscape/slides) or the [Yellow Pages](/main/yellowpages), pick **three** that your chosen piece of software could/should connect to and/or use.

2. Explain why you chose these three and what makes them valuable for the chosen piece of software.


### Software Management Plan

1. Create a software management plan template which fits your piece of software by using step 2 and 3 from the [Template Building exercise](/modules/softwaremanagementplans/templatebuilding) in the software management plan module.

2. Fill out your own software management plan template. Keep it short and to the point.

4 changes: 2 additions & 2 deletions modules/documentation/index.md
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---
title: Documentation
category: Development
category: Good Practices
order: 13
abstract: Why should researchers document their code?
abstract: Why should researchers document their code? Which kinds of documentation are useful for what purpose?
author: eScience Center
thumbnail: "thumbnail-documentation.jpg"
visibility: visible
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2 changes: 1 addition & 1 deletion modules/licenses/index.md
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Expand Up @@ -4,7 +4,7 @@ category: Reusability
order: 25
author: eScience Center
abstract: What are software licenses, copyright and open-source, how are they related and why is it important to think about?
thumbnail: "thumbnail-licenses.jpg"
thumbnail: "thumbnail-licenses.png"
visibility: visible
---

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12 changes: 8 additions & 4 deletions modules/researchsoftware/exercise-research-life-cycle.md
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Expand Up @@ -10,11 +10,9 @@ Take a look at the research life cycle below.

<img src="media/researchcycle.png" alt="The Research Life Cycle" width="400"/>

Think of a piece of research software you have used or developed.
### Pick a piece of software

Where does it fit in the research life cycle?

### Existing software
Think of a piece of software you have heard about, used, contributed to or developed in a research context.

The following research software can also be used as examples:

Expand All @@ -23,3 +21,9 @@ The following research software can also be used as examples:
- [Haddock](https://research-software-directory.org/software/haddock3)
- [worcs](https://cjvanlissa.github.io/worcs/index.html)
- [democracy-topic-modelling](https://research-software-directory.org/software/democracy-topic-modelling)

### Answer the following questions
Write a short paragraph (max. 100 words) per question:

- Would you consider this Research Software or Software used in Research? Explain why.
- Where does it fit in the research life cycle? Explain why.
2 changes: 1 addition & 1 deletion modules/researchsoftware/index.md
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---
title: Research software
title: What is (Research) Software?
category: Getting started
order: 0
author: eScience Center
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---
title: Software Assessment
title: Build a Template
type: exercise
order: 3
---

# Assess your software
# Build your own Software Management Plan template

*In a live setting, this exercise is done in groups.
Each group will be assigned a software project.
The group will then create an SMP for this project.*
The group will then create an SMP template for this project.*

## Step 1: Choose a software project

Expand All @@ -24,10 +24,11 @@ If you don't have a project in mind, you can use one of the following:

Find the Practical Guide at [tinyurl.com/SMP-guide](https://doi.org/10.5281/zenodo.7589725).

## Step 2: Assess the management level needed
## Step 2: Building blocks

- Look at the software repository or page in the Research Software Directory.
- Assess what level of management the software needs: low, medium, or high.
- Print the following [figure from the Practical Guide](media/SMP-requirements.pdf) and cut out the various hexagons/requirements.
- Look at the software repository or page in the Research Software Directory or any other information you can find about your software.
- Take a fresh sheet of paper and some glue and glue the requirements that you think are relevant to your chosen software. You can also use the physical space on your sheet of paper to group the various requirements together.

For this, use the following considerations (section 5 in [the guide](https://doi.org/10.5281/zenodo.7589725)):

Expand All @@ -38,12 +39,9 @@ For this, use the following considerations (section 5 in [the guide](https://doi
- Research, either your own or of others. This effect could be due to an obvious software failure ("crash") or a hidden one, for example, returning inconsistent numerical results on different operating systems.
3. **Maintenance**. The long-term effort needed to maintain the software as long as it might be used as a standalone tool or dependency. This includes maintenance functions that can extend beyond the lifespan of the original development project and includes fixing bugs, dependency management, operating system compatibility, and security issues.

This may not be a clear-cut decision, but that is fine.
The goal is to get a sense of the level of management needed.
Discuss with your group and come to a consensus.

## Step 3: Fill in the SMP template
## Step 3: Assess your template

From the assessment made in Step 1, get the requirements that match the level of management needed.

Copy a template, and fill it in for your software project.
- Assess what level of management (low, medium, high) your custom template matches most.
- What is different from your custom template and the default management level template? Does this difference make sense?
- Finally use section 6 (Implementation Examples) from the [Practical Guide to Software Management Plans](https://doi.org/10.5281/zenodo.7589725) to create the Software Management Plan template with questions that a researcher/developer would have to answer.
2 changes: 1 addition & 1 deletion modules/testing/index.md
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---
title: Software testing
category: Development
category: Good Practices
order: 49
abstract: Local testing of your software and using Continuous Integration and Continuous Deployment (CI/CD)
author: eScience Center
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2 changes: 1 addition & 1 deletion modules/version-control/index.md
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---
order: 1
trl: high
category: Development
category: Good Practices
title: Software version control
abstract: Local version control and collaborative code development, for example using Git and GitHub
author: eScience Center, TU Delft
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