Parallel

.gitignore

@@ -55,3 +55,10 @@ docs/_build/
 
 # PyBuilder
 target/
+
+# pycharm
+.idea/
+
+#other
+*~
+run.py

.gitmodules

@@ -1,6 +0,0 @@
-[submodule "spt_dataset_manager"]
-	path = spt_dataset_manager
-	url = https://github.com/erdc-cm/spt_dataset_manager.git
-[submodule "AutoRoutePy"]
-	path = AutoRoutePy
-	url = https://github.com/erdc-cm/AutoRoute-py

.travis.yml

@@ -0,0 +1,70 @@
+#-------------------------------------------------------------------------------
+# .travis.yml
+# Author: Alan D. Snow, 2017
+#-------------------------------------------------------------------------------
+#-------------------------------------------------------------------------------
+#System specifications for Travis CI
+#-------------------------------------------------------------------------------
+language: c
+os:
+  - linux
+env:
+  - TRAVIS_PYTHON_VERSION="2.7"
+  - TRAVIS_PYTHON_VERSION="3.5"
+  - TRAVIS_PYTHON_VERSION="3.6"
+notifications:
+  email: false
+
+before_install:
+#-----------------------------------------------------------------------------
+# Install gcc, g++, gfortran
+#-----------------------------------------------------------------------------
+- sudo apt-get update -qq
+- sudo apt-get install -y g++ gfortran
+#-----------------------------------------------------------------------------
+# Install minconda
+#-----------------------------------------------------------------------------
+- wget -O miniconda.sh http://repo.continuum.io/miniconda/Miniconda${TRAVIS_PYTHON_VERSION:0:1}-latest-Linux-x86_64.sh
+- bash miniconda.sh -b -p $HOME/miniconda
+- export PATH=$HOME/miniconda/bin:$PATH
+- conda config --set always_yes yes
+- conda config --add channels conda-forge
+- conda update conda python
+#-----------------------------------------------------------------------------
+# Create conda environment for spt_compute
+#-----------------------------------------------------------------------------
+- conda create -n spt_compute python=$TRAVIS_PYTHON_VERSION
+- source activate spt_compute
+- conda env update -n spt_compute -f conda_env.yml
+- source deactivate
+- source activate spt_compute
+#-------------------------------------------------------------------------------
+#Creating directory for installation of libraries used by RAPID & RAPIDpy
+#-------------------------------------------------------------------------------
+- export INSTALLZ_DIR=$TRAVIS_BUILD_DIR/installz
+- mkdir $INSTALLZ_DIR
+#-------------------------------------------------------------------------------
+#Installing RAPID
+#-------------------------------------------------------------------------------
+- cd $TRAVIS_BUILD_DIR/..
+- git clone https://github.com/c-h-david/rapid.git --branch 20161221
+- cd rapid
+- bash rapid_install_prereqs.sh -i=$INSTALLZ_DIR
+- source rapid_specify_varpath.sh $INSTALLZ_DIR
+- cd src
+- make rapid
+#-------------------------------------------------------------------------------
+# Install spt_compute
+#-------------------------------------------------------------------------------
+install:
+- cd $TRAVIS_BUILD_DIR
+- pip install -e .[tests]
+script:
+- py.test --cov-report term-missing --cov=spt_compute
+#- flake8  --ignore=F401 spt_compute setup.py tests
+#- pylint spt_compute
+#-------------------------------------------------------------------------------
+# Coveralls stats for code coverage
+#-------------------------------------------------------------------------------
+after_success:
+  - coveralls

LICENSE

@@ -1,22 +1,27 @@
-The MIT License (MIT)
+Copyright (c) 2016, ERDC Computational Mechanics
+All rights reserved.
 
-Copyright (c) 2015 CI-WATER
+Redistribution and use in source and binary forms, with or without
+modification, are permitted provided that the following conditions are met:
 
-Permission is hereby granted, free of charge, to any person obtaining a copy
-of this software and associated documentation files (the "Software"), to deal
-in the Software without restriction, including without limitation the rights
-to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
-copies of the Software, and to permit persons to whom the Software is
-furnished to do so, subject to the following conditions:
+* Redistributions of source code must retain the above copyright notice, this
+  list of conditions and the following disclaimer.
 
-The above copyright notice and this permission notice shall be included in all
-copies or substantial portions of the Software.
+* Redistributions in binary form must reproduce the above copyright notice,
+  this list of conditions and the following disclaimer in the documentation
+  and/or other materials provided with the distribution.
 
-THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
-IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
-FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
-AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
-LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
-OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
-SOFTWARE.
+* Neither the name of spt_ecmwf_autorapid_process nor the names of its
+  contributors may be used to endorse or promote products derived from
+  this software without specific prior written permission.
 
+THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
+AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
+IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
+DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE
+FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
+DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
+SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
+CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
+OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
+OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.