refact: getPhases()[k] -> getPhase(k)

equinor · Nov 25, 2024 · ec36cf4 · ec36cf4
1 parent 148a643
commit ec36cf4
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Showing 110 changed files with 2,316 additions and 2,363 deletions.
diff --git a/src/main/java/neqsim/chemicalreactions/ChemicalReactionOperations.java b/src/main/java/neqsim/chemicalreactions/ChemicalReactionOperations.java
@@ -178,7 +178,7 @@ public void setReactiveComponents() {
         if (name.equals(allComponentNames[i])) {
           components[k++] = system.getPhase(phase).getComponent(j);
           // System.out.println("reactive comp " +
-          // system.getPhases()[1].getComponent(j).getName());
+          // system.getPhase(1).getComponent(j).getName());
         }
       }
     }

diff --git a/src/main/java/neqsim/chemicalreactions/chemicalequilibrium/ChemicalEquilibrium.java b/src/main/java/neqsim/chemicalreactions/chemicalequilibrium/ChemicalEquilibrium.java
@@ -411,10 +411,10 @@ public double step() {
         return step;
       } else {
         // chem_pot_omega[i] = R*T*(chem_ref[i]+ Math.log(n_omega[i]/n_t) +
-        // Math.log(system.getPhases()[1].getComponents()[components[i].getComponentNumber()].getFugacityCoefficient()
+        // Math.log(system.getPhase(1).getComponents()[components[i].getComponentNumber()].getFugacityCoefficient()
         // / chem_pot_pure[i]));
         // chem_pot[i] = R*T*(chem_ref[i] + Math.log(n_mol[i]/n_t)+
-        // Math.log(system.getPhases()[1].getComponents()[components[i].getComponentNumber()].getFugacityCoefficient()
+        // Math.log(system.getPhase(1).getComponents()[components[i].getComponentNumber()].getFugacityCoefficient()
         // / chem_pot_pure[i]));
 
         if (system.getPhase(phasenumb).getComponents()[components[i].getComponentNumber()]
@@ -426,7 +426,7 @@ public double step() {
                   - Math.log(n_t) + logactivityVec[i]);
           // system.getPhase(phasenumb).getActivityCoefficient(components[i].getComponentNumber(),components[waterNumb].getComponentNumber())));
           // System.out.println("solvent activ: "+ i + " " +
-          // system.getPhases()[1].getComponents()[components[i].getComponentNumber()].getFugacityCoefficient()
+          // system.getPhase(1).getComponents()[components[i].getComponentNumber()].getFugacityCoefficient()
           // / chem_pot_pure[i]);
         } else {
           chem_pot[i] = R * system.getPhase(phasenumb).getTemperature()
@@ -436,7 +436,7 @@ public double step() {
                   - Math.log(n_t) + logactivityVec[i]);
           // system.getPhase(phasenumb).getActivityCoefficient(components[i].getComponentNumber(),components[waterNumb].getComponentNumber())));
           // System.out.println("solute activ : " + i + " " +
-          // system.getPhases()[1].getComponents()[components[i].getComponentNumber()].getFugacityCoefficient()
+          // system.getPhase(1).getComponents()[components[i].getComponentNumber()].getFugacityCoefficient()
           // / chem_pot_dilute[i]);
         }
         chem_pot_omega[i] = R * system.getPhase(phasenumb).getTemperature()

diff --git a/...va/neqsim/chemicalreactions/chemicalequilibrium/LinearProgrammingChemicalEquilibrium.java b/...va/neqsim/chemicalreactions/chemicalequilibrium/LinearProgrammingChemicalEquilibrium.java
@@ -280,7 +280,7 @@ public void changePrimaryComponents() {
    *
    * double[] nEts = new double[atemp.getColumnDimension()]; double totm=0.0; for(int
    * k=0;k<atemp.getColumnDimension();k++){ nEts[k] = xEts[k]*moles;
-   * //system.getPhases()[1].getNumberOfMolesInPhase(); totm += nEts[k];
+   * //system.getPhase(1).getNumberOfMolesInPhase(); totm += nEts[k];
    * //System.out.println("N check: " + "  comp " + components[k].getComponentName() + "  " +
    * nEts[k]); } //System.out.println("tot moles : " + system.getPhase(1).getNumberOfMolesInPhase()
    * + "  tot " +totm);

diff --git a/src/main/java/neqsim/chemicalreactions/chemicalreaction/ChemicalReaction.java b/src/main/java/neqsim/chemicalreactions/chemicalreaction/ChemicalReaction.java
@@ -256,7 +256,7 @@ public void initMoleNumbers(PhaseInterface phase, ComponentInterface[] component
     for (int i = 0; i < names.length; i++) {
       for (int j = 0; j < components.length; j++) {
         // System.out.println("names: " + names[i] + " " +
-        // system.getPhases()[0].getComponent(j).getName());
+        // system.getPhase(0).getComponent(j).getName());
         if (this.names[i].equals(components[j].getName())) {
           for (int k = 0; k < Amatrix.length; k++) {
             tempAmatrix.set(k, i, Amatrix[k][j]);
@@ -348,7 +348,7 @@ public void checkK(SystemInterface system) {
     // double cK=Math.log(getK(system.getTemperature()));
     // for(int i=0;i<names.length;i++){
     // // cK -=
-    // Math.log(moles[i]/system.getPhases()[0].getNumberOfMolesInPhase())*stocCoefs[i];
+    // Math.log(moles[i]/system.getPhase(0).getNumberOfMolesInPhase())*stocCoefs[i];
     // }
     // System.out.println("ck: " +cK);
   }

diff --git a/src/main/java/neqsim/chemicalreactions/chemicalreaction/ChemicalReactionList.java b/src/main/java/neqsim/chemicalreactions/chemicalreaction/ChemicalReactionList.java
@@ -351,9 +351,9 @@ public void calcReacMatrix(PhaseInterface phase) {
               for (int o = 0; o < reaction.getNames().length; o++) {
                 if (phase.getComponent(k).getName().equals(reaction.getNames()[o])) {
                   // System.out.println("comp1 " +
-                  // system.getPhases()[1].getComponent(i).getComponentName() +
+                  // system.getPhase(1).getComponent(i).getComponentName() +
                   // " comp2 "
-                  // +system.getPhases()[1].getComponent(k).getComponentName()
+                  // +system.getPhase(1).getComponent(k).getComponentName()
                   // );
                   tempReacMatrix[i][k] = reaction.getRateFactor(phase);
                   tempStocMatrix[i][k] = -reaction.getStocCoefs()[o];
@@ -404,12 +404,12 @@ public double[][] getStocMatrix() {
    */
   public Matrix calcReacRates(PhaseInterface phase, ComponentInterface[] components) {
     Matrix modReacMatrix = new Matrix(reacMatrix).copy();
-    // System.out.println(" vol " + system.getPhases()[1].getMolarVolume());
+    // System.out.println(" vol " + system.getPhase(1).getMolarVolume());
 
     for (int i = 0; i < chemicalReactionList.size(); i++) {
       for (int j = 0; j < components.length; j++) {
         // System.out.println("mol cons " +
-        // components[j].getx()/system.getPhases()[1].getMolarMass());
+        // components[j].getx()/system.getPhase(1).getMolarMass());
         modReacMatrix.set(i, j,
             Math.pow(components[j].getx() * phase.getDensity() / phase.getMolarMass(),
                 Math.abs(reacMatrix[i][j])));

diff --git a/src/main/java/neqsim/fluidmechanics/flownode/FlowNode.java b/src/main/java/neqsim/fluidmechanics/flownode/FlowNode.java
@@ -651,7 +651,7 @@ public String[][] createTable(String name) {
       return table;
     }
 
-    rows = bulkSystem.getPhases()[0].getNumberOfComponents() * 10;
+    rows = bulkSystem.getPhase(0).getNumberOfComponents() * 10;
     String[][] table = new String[rows][5];
 
     DecimalFormat nf = new DecimalFormat();
@@ -665,88 +665,86 @@ public String[][] createTable(String name) {
     StringBuffer buf = new StringBuffer();
     FieldPosition test = new FieldPosition(0);
     for (int i = 0; i < bulkSystem.getNumberOfPhases(); i++) {
-      for (int j = 0; j < bulkSystem.getPhases()[0].getNumberOfComponents(); j++) {
-        table[j + 1][0] = bulkSystem.getPhases()[0].getComponent(j).getName();
+      for (int j = 0; j < bulkSystem.getPhase(0).getNumberOfComponents(); j++) {
+        table[j + 1][0] = bulkSystem.getPhase(0).getComponent(j).getName();
         buf = new StringBuffer();
         table[j + 1][i + 1] =
             nf.format(bulkSystem.getPhase(bulkSystem.getPhaseIndex(i)).getComponent(j).getx(), buf,
                 test).toString();
         table[j + 1][4] = "[-] bulk";
       }
 
-      for (int j = 0; j < bulkSystem.getPhases()[0].getNumberOfComponents(); j++) {
-        table[j + bulkSystem.getPhases()[0].getNumberOfComponents() + 2][0] =
-            getInterphaseSystem().getPhases()[0].getComponent(j).getName();
+      for (int j = 0; j < bulkSystem.getPhase(0).getNumberOfComponents(); j++) {
+        table[j + bulkSystem.getPhase(0).getNumberOfComponents() + 2][0] =
+            getInterphaseSystem().getPhase(0).getComponent(j).getName();
         buf = new StringBuffer();
-        table[j + bulkSystem.getPhases()[0].getNumberOfComponents() + 2][i + 1] =
+        table[j + bulkSystem.getPhase(0).getNumberOfComponents() + 2][i + 1] =
             nf.format(getInterphaseSystem().getPhase(getInterphaseSystem().getPhaseIndex(i))
                 .getComponent(j).getx(), buf, test).toString();
-        table[j + bulkSystem.getPhases()[0].getNumberOfComponents() + 2][4] = "[-] interface";
+        table[j + bulkSystem.getPhase(0).getNumberOfComponents() + 2][4] = "[-] interface";
       }
 
-      for (int j = 0; j < bulkSystem.getPhases()[0].getNumberOfComponents(); j++) {
-        table[j + 2 * bulkSystem.getPhases()[0].getNumberOfComponents() + 3][0] =
-            bulkSystem.getPhases()[0].getComponent(j).getName();
+      for (int j = 0; j < bulkSystem.getPhase(0).getNumberOfComponents(); j++) {
+        table[j + 2 * bulkSystem.getPhase(0).getNumberOfComponents() + 3][0] =
+            bulkSystem.getPhase(0).getComponent(j).getName();
         buf = new StringBuffer();
-        table[j + 2 * bulkSystem.getPhases()[0].getNumberOfComponents() + 3][i + 1] =
+        table[j + 2 * bulkSystem.getPhase(0).getNumberOfComponents() + 3][i + 1] =
             nf.format(getFluidBoundary().getInterphaseMolarFlux(j), buf, test).toString();
-        table[j + 2 * bulkSystem.getPhases()[0].getNumberOfComponents() + 3][4] = "[mol/sec*m^2]";
+        table[j + 2 * bulkSystem.getPhase(0).getNumberOfComponents() + 3][4] = "[mol/sec*m^2]";
       }
       buf = new StringBuffer();
-      table[3 * bulkSystem.getPhases()[0].getNumberOfComponents() + 5][0] = "Reynolds Number";
-      table[3 * bulkSystem.getPhases()[0].getNumberOfComponents() + 5][i + 1] =
+      table[3 * bulkSystem.getPhase(0).getNumberOfComponents() + 5][0] = "Reynolds Number";
+      table[3 * bulkSystem.getPhase(0).getNumberOfComponents() + 5][i + 1] =
           nf.format(reynoldsNumber[i], buf, test).toString();
-      table[3 * bulkSystem.getPhases()[0].getNumberOfComponents() + 5][4] = "[-]";
+      table[3 * bulkSystem.getPhase(0).getNumberOfComponents() + 5][4] = "[-]";
 
       // Double.longValue(system.getPhase(phaseIndex[i]).getBeta());
       buf = new StringBuffer();
-      table[3 * bulkSystem.getPhases()[0].getNumberOfComponents() + 6][0] = "Velocity";
-      table[3 * bulkSystem.getPhases()[0].getNumberOfComponents() + 6][i + 1] =
+      table[3 * bulkSystem.getPhase(0).getNumberOfComponents() + 6][0] = "Velocity";
+      table[3 * bulkSystem.getPhase(0).getNumberOfComponents() + 6][i + 1] =
           nf.format(velocity[i], buf, test).toString();
-      table[3 * bulkSystem.getPhases()[0].getNumberOfComponents() + 6][4] = "[m/sec]";
+      table[3 * bulkSystem.getPhase(0).getNumberOfComponents() + 6][4] = "[m/sec]";
 
       buf = new StringBuffer();
-      table[3 * bulkSystem.getPhases()[0].getNumberOfComponents() + 7][0] = "Gas Heat Flux";
-      table[3 * bulkSystem.getPhases()[0].getNumberOfComponents() + 7][i + 1] =
+      table[3 * bulkSystem.getPhase(0).getNumberOfComponents() + 7][0] = "Gas Heat Flux";
+      table[3 * bulkSystem.getPhase(0).getNumberOfComponents() + 7][i + 1] =
           nf.format(getFluidBoundary().getInterphaseHeatFlux(0), buf, test).toString();
-      table[3 * bulkSystem.getPhases()[0].getNumberOfComponents() + 7][4] = "[J/sec*m^2]";
+      table[3 * bulkSystem.getPhase(0).getNumberOfComponents() + 7][4] = "[J/sec*m^2]";
 
       buf = new StringBuffer();
-      table[3 * bulkSystem.getPhases()[0].getNumberOfComponents() + 8][0] = "Pressure";
-      table[3 * bulkSystem.getPhases()[0].getNumberOfComponents() + 8][i + 1] =
+      table[3 * bulkSystem.getPhase(0).getNumberOfComponents() + 8][0] = "Pressure";
+      table[3 * bulkSystem.getPhase(0).getNumberOfComponents() + 8][i + 1] =
           Double.toString(bulkSystem.getPhase(bulkSystem.getPhaseIndex(i)).getPressure());
-      table[3 * bulkSystem.getPhases()[0].getNumberOfComponents() + 8][4] = "[bar]";
+      table[3 * bulkSystem.getPhase(0).getNumberOfComponents() + 8][4] = "[bar]";
 
       buf = new StringBuffer();
-      table[3 * bulkSystem.getPhases()[0].getNumberOfComponents() + 9][0] = "Bulk Temperature";
-      table[3 * bulkSystem.getPhases()[0].getNumberOfComponents() + 9][i + 1] =
+      table[3 * bulkSystem.getPhase(0).getNumberOfComponents() + 9][0] = "Bulk Temperature";
+      table[3 * bulkSystem.getPhase(0).getNumberOfComponents() + 9][i + 1] =
           Double.toString(bulkSystem.getPhase(bulkSystem.getPhaseIndex(i)).getTemperature());
-      table[3 * bulkSystem.getPhases()[0].getNumberOfComponents() + 9][4] = "[K]";
+      table[3 * bulkSystem.getPhase(0).getNumberOfComponents() + 9][4] = "[K]";
 
       buf = new StringBuffer();
-      table[3 * bulkSystem.getPhases()[0].getNumberOfComponents() + 10][0] =
-          "Interface Temperature";
-      table[3 * bulkSystem.getPhases()[0].getNumberOfComponents() + 10][i + 1] = Double
+      table[3 * bulkSystem.getPhase(0).getNumberOfComponents() + 10][0] = "Interface Temperature";
+      table[3 * bulkSystem.getPhase(0).getNumberOfComponents() + 10][i + 1] = Double
           .toString(getInterphaseSystem().getPhase(bulkSystem.getPhaseIndex(i)).getTemperature());
-      table[3 * bulkSystem.getPhases()[0].getNumberOfComponents() + 10][4] = "[K]";
+      table[3 * bulkSystem.getPhase(0).getNumberOfComponents() + 10][4] = "[K]";
 
       buf = new StringBuffer();
-      table[3 * bulkSystem.getPhases()[0].getNumberOfComponents() + 11][0] = "Interface Area";
-      table[3 * bulkSystem.getPhases()[0].getNumberOfComponents() + 11][i + 1] =
+      table[3 * bulkSystem.getPhase(0).getNumberOfComponents() + 11][0] = "Interface Area";
+      table[3 * bulkSystem.getPhase(0).getNumberOfComponents() + 11][i + 1] =
           nf.format(getInterphaseContactArea());
-      table[3 * bulkSystem.getPhases()[0].getNumberOfComponents() + 11][4] = "[m^2]";
+      table[3 * bulkSystem.getPhase(0).getNumberOfComponents() + 11][4] = "[m^2]";
 
       buf = new StringBuffer();
-      table[3 * bulkSystem.getPhases()[0].getNumberOfComponents() + 12][0] =
-          "Inner wall temperature";
-      table[3 * bulkSystem.getPhases()[0].getNumberOfComponents() + 12][i + 1] =
+      table[3 * bulkSystem.getPhase(0).getNumberOfComponents() + 12][0] = "Inner wall temperature";
+      table[3 * bulkSystem.getPhase(0).getNumberOfComponents() + 12][i + 1] =
           Double.toString(pipe.getInnerWallTemperature());
-      table[3 * bulkSystem.getPhases()[0].getNumberOfComponents() + 12][4] = "K";
+      table[3 * bulkSystem.getPhase(0).getNumberOfComponents() + 12][4] = "K";
 
       buf = new StringBuffer();
-      table[3 * bulkSystem.getPhases()[0].getNumberOfComponents() + 13][0] = "Node";
-      table[3 * bulkSystem.getPhases()[0].getNumberOfComponents() + 13][i + 1] = name;
-      table[3 * bulkSystem.getPhases()[0].getNumberOfComponents() + 13][4] = "-";
+      table[3 * bulkSystem.getPhase(0).getNumberOfComponents() + 13][0] = "Node";
+      table[3 * bulkSystem.getPhase(0).getNumberOfComponents() + 13][i + 1] = name;
+      table[3 * bulkSystem.getPhase(0).getNumberOfComponents() + 13][4] = "-";
     }
 
     return table;

diff --git a/...java/neqsim/fluidmechanics/flownode/fluidboundary/heatmasstransfercalc/FluidBoundary.java b/...java/neqsim/fluidmechanics/flownode/fluidboundary/heatmasstransfercalc/FluidBoundary.java
@@ -78,8 +78,8 @@ public FluidBoundary(SystemInterface system) {
     rateCorrectionMatrix = new Matrix[2];
     totalMassTransferCoefficientMatrix = new Matrix[2];
     massTransferCoefficientMatrix = new Matrix[2];
-    jFlux = new Matrix(system.getPhases()[0].getNumberOfComponents() - 1, 1);
-    nFlux = new Matrix(system.getPhases()[0].getNumberOfComponents(), 1);
+    jFlux = new Matrix(system.getPhase(0).getNumberOfComponents() - 1, 1);
+    nFlux = new Matrix(system.getPhase(0).getNumberOfComponents(), 1);
     nFlux.set(0, 0, 0.0);
     nFlux.set(1, 0, 0.0);
     heatTransferCoefficient = new double[2];
@@ -427,7 +427,7 @@ public String[][] createTable(String name) {
       return table;
     }
 
-    rows = bulkSystem.getPhases()[0].getNumberOfComponents() * 10;
+    rows = bulkSystem.getPhase(0).getNumberOfComponents() * 10;
     String[][] table = new String[rows][5];
 
     // String[] names = {"", "Phase 1", "Phase 2", "Phase 3", "Unit"};
@@ -438,41 +438,41 @@ public String[][] createTable(String name) {
     StringBuffer buf = new StringBuffer();
     FieldPosition test = new FieldPosition(0);
     for (int i = 0; i < bulkSystem.getNumberOfPhases(); i++) {
-      for (int j = 0; j < bulkSystem.getPhases()[0].getNumberOfComponents(); j++) {
+      for (int j = 0; j < bulkSystem.getPhase(0).getNumberOfComponents(); j++) {
         table[j + 1][0] =
-            "eff. mass trans coef. " + bulkSystem.getPhases()[0].getComponent(j).getName();
+            "eff. mass trans coef. " + bulkSystem.getPhase(0).getComponent(j).getName();
         buf = new StringBuffer();
         table[j + 1][i + 1] =
             nf.format(getEffectiveMassTransferCoefficient(i, j), buf, test).toString();
         table[j + 1][4] = "[-] bulkcoef";
       }
       if (getBulkSystem().isChemicalSystem()) {
         getEnhancementFactor().calcEnhancementVec(i);
-        for (int j = 0; j < bulkSystem.getPhases()[0].getNumberOfComponents(); j++) {
-          table[j + bulkSystem.getPhases()[0].getNumberOfComponents() + 2][0] =
-              "enhancement " + getInterphaseSystem().getPhases()[0].getComponent(j).getName();
+        for (int j = 0; j < bulkSystem.getPhase(0).getNumberOfComponents(); j++) {
+          table[j + bulkSystem.getPhase(0).getNumberOfComponents() + 2][0] =
+              "enhancement " + getInterphaseSystem().getPhase(0).getComponent(j).getName();
           buf = new StringBuffer();
-          table[j + bulkSystem.getPhases()[0].getNumberOfComponents() + 2][i + 1] =
+          table[j + bulkSystem.getPhase(0).getNumberOfComponents() + 2][i + 1] =
               nf.format(getEnhancementFactor().getEnhancementVec(j), buf, test).toString();
-          table[j + bulkSystem.getPhases()[0].getNumberOfComponents() + 2][4] = "[-] interfacecoef";
+          table[j + bulkSystem.getPhase(0).getNumberOfComponents() + 2][4] = "[-] interfacecoef";
         }
       }
       getBulkSystem().getPhase(i).getPhysicalProperties().calcEffectiveDiffusionCoefficients();
-      for (int j = 0; j < bulkSystem.getPhases()[0].getNumberOfComponents(); j++) {
-        table[j + 2 * bulkSystem.getPhases()[0].getNumberOfComponents() + 3][0] =
-            "schmidt " + bulkSystem.getPhases()[0].getComponent(j).getName();
+      for (int j = 0; j < bulkSystem.getPhase(0).getNumberOfComponents(); j++) {
+        table[j + 2 * bulkSystem.getPhase(0).getNumberOfComponents() + 3][0] =
+            "schmidt " + bulkSystem.getPhase(0).getComponent(j).getName();
         buf = new StringBuffer();
-        table[j + 2 * bulkSystem.getPhases()[0].getNumberOfComponents() + 3][i + 1] = nf.format(
+        table[j + 2 * bulkSystem.getPhase(0).getNumberOfComponents() + 3][i + 1] = nf.format(
             getBulkSystem().getPhase(i).getPhysicalProperties().getEffectiveSchmidtNumber(j), buf,
             test).toString();
-        table[j + 2 * bulkSystem.getPhases()[0].getNumberOfComponents() + 3][4] =
+        table[j + 2 * bulkSystem.getPhase(0).getNumberOfComponents() + 3][4] =
             "[-] fluidboundarycoef";
       }
 
       buf = new StringBuffer();
-      table[3 * bulkSystem.getPhases()[0].getNumberOfComponents() + 11][0] = "Node";
-      table[3 * bulkSystem.getPhases()[0].getNumberOfComponents() + 11][i + 1] = name;
-      table[3 * bulkSystem.getPhases()[0].getNumberOfComponents() + 11][4] = "-";
+      table[3 * bulkSystem.getPhase(0).getNumberOfComponents() + 11][0] = "Node";
+      table[3 * bulkSystem.getPhase(0).getNumberOfComponents() + 11][i + 1] = name;
+      table[3 * bulkSystem.getPhase(0).getNumberOfComponents() + 11][4] = "-";
     }
     return table;
   }

diff --git a/...fluidboundary/heatmasstransfercalc/equilibriumfluidboundary/EquilibriumFluidBoundary.java b/...fluidboundary/heatmasstransfercalc/equilibriumfluidboundary/EquilibriumFluidBoundary.java
@@ -56,7 +56,7 @@ public void solve() {
   /** {@inheritDoc} */
   @Override
   public double[] calcFluxes() {
-    for (int i = 0; i < bulkSystem.getPhases()[0].getNumberOfComponents(); i++) {
+    for (int i = 0; i < bulkSystem.getPhase(0).getNumberOfComponents(); i++) {
       nFlux.set(i, 0, 0);
     }
     return nFlux.getArray()[0];