Replace requirement files with pyproject

.github/workflows/annotate_python.yml

@@ -0,0 +1,30 @@
+name: Annotate Python
+
+on: [pull_request]
+
+concurrency:
+  group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }}
+  cancel-in-progress: true
+
+jobs:
+  annotate-python-linting:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v4
+        with:
+          fetch-depth: -1
+      - name: Setup Python
+        uses: actions/setup-python@v4
+        with:
+          python-version: "3.11"
+      - name: Install flake8
+        run: pip install flake8 flake8-bugbear flake8-simplify flake8-debugger flake8-pep3101 Flake8-pyproject
+      - name: install project
+        run: pip install ".[dev, types]"
+      - name: find changed files
+        id: find_changed_files
+        run: echo "changed_files=$(git diff --name-only ${{github.sha}} ${{github.event.pull_request.base.sha}} | tr ' ' '\n' |  xargs ls -d 2>/dev/null | grep -E '.py$' | tr '\n' ' ')" >> "$GITHUB_OUTPUT"
+      - run: echo ::add-matcher::.github/flake8-matcher.json
+      - name: run flake8
+        run: flake8 --exit-zero --ignore "W503, E203" ${{steps.find_changed_files.outputs.changed_files}}
+        if: steps.find_changed_files.outputs.changed_files != ''

.github/workflows/build.yml

@@ -161,9 +161,7 @@ jobs:
         python-version: ${{ matrix.python-version }}
         cache: "pip"
         cache-dependency-path: |
-          setup.py
           pyproject.toml
-          dev-requirements.txt
 
     - name: Get wheels
       uses: actions/download-artifact@v3
@@ -172,10 +170,7 @@ jobs:
 
     - name: Install wheel
       run: |
-        find . -name "*.whl" -exec pip install {} \;
-
-    - name: Install dependencies
-      run: pip install -r dev-requirements.txt
+        find . -name "*.whl" -exec pip install "{}[dev]" \;
 
     - name: Make test directory
       run: |

.github/workflows/coverage.yml

@@ -36,8 +36,7 @@ jobs:
 
     - name: Install with dependencies
       run: |
-        pip install .
-        pip install -r dev-requirements.txt
+        pip install ".[dev]"
 
     - name: Test GUI
       if: matrix.test-type == 'gui-tests'

.github/workflows/doctest.yml

@@ -30,12 +30,7 @@ jobs:
         cache-dependency-path: |
           setup.py
           pyproject.toml
-          dev-requirements.txt
-    - run: pip install -e .
-
-    - name: Install with dependencies
-      run: |
-        pip install -r dev-requirements.txt
+    - run: pip install -e ".[dev]"
 
     - name: Test doctest
       run: |

.github/workflows/style.yml

@@ -32,11 +32,10 @@ jobs:
         cache-dependency-path: |
           setup.py
           pyproject.toml
-          style-requirements.txt
 
-    - name: Install dependencies
+    - name: Install ERT with style dependencies
       run: |
-        pip install -r style-requirements.txt
+        pip install ".[style]"
 
     - name: Clang Format
       run: ./script/clang-format --check
@@ -59,5 +58,4 @@ jobs:
 
     - name: Run pylint
       run: |
-        pip install .  # We need the dependencies of ERT to avoid import-error
         script/pylint

.github/workflows/test_ert.yml

@@ -29,7 +29,6 @@ jobs:
         cache-dependency-path: |
           setup.py
           pyproject.toml
-          dev-requirements.txt
 
     - name: Get wheels
       uses: actions/download-artifact@v3
@@ -38,10 +37,7 @@ jobs:
 
     - name: Install wheel
       run: |
-        find . -name "*.whl" -exec pip install {} \;
-
-    - name: Install dependencies
-      run: pip install -r dev-requirements.txt
+        find . -name "*.whl" -exec pip install "{}[dev]" \;
 
     - name: Test GUI
       if: inputs.test-type == 'gui-test'

.github/workflows/typing.yml

@@ -30,13 +30,11 @@ jobs:
         python-version: ${{ matrix.python-version }}
     - name: Install ERT and dependencies
       run: |
-        pip install .
+        pip install ".[dev, types]"
     - name: Install dependencies
     # type checking requires protobuf stubs
       run: |
         python -m pip install --upgrade pip
-        python -m pip install -r types-requirements.txt
-        python -m pip install -r dev-requirements.txt
         python -m pip install grpcio-tools
         python -m grpc_tools.protoc -I src/_ert_com_protocol --mypy_out=src/_ert_com_protocol src/_ert_com_protocol/_schema.proto
     - run: echo ::add-matcher::.github/mypy-matcher.json

.readthedocs.yaml

@@ -1,10 +1,11 @@
 version: 2
 
 python:
-   install:
-   - requirements: dev-requirements.txt
-   - method: pip
-     path: .
+  install:
+    - method: pip
+      path: .
+      extra_requirements:
+        - dev
 
 sphinx:
   builder: html

CONTRIBUTING.md

@@ -69,7 +69,7 @@ noise in the review process.
 
 You can build the documentation after installation by running
 ```bash
-pip install -r dev-requirements.txt
+pip install ".[dev]" 
 sphinx-build -n -v -E -W ./docs ./tmp/ert_docs
 ```
 and then open the generated `./tmp/ert_docs/index.html` in a browser.

README.md

@@ -132,7 +132,7 @@ pip install --editable .
 Additional development packages must be installed to run the test suite:
 
 ```sh
-pip install -r dev-requirements.txt
+pip install ".[dev]" 
 pytest tests/
 ```
 

ci/run_ert_ctests.sh

@@ -60,8 +60,7 @@ build_ert_clib () {
 
 build_ert_dev () {
 	enable_environment
-	pip install ${ERT_SOURCE_ROOT}
-	pip install -r ${ERT_SOURCE_ROOT}/dev-requirements.txt
+	pip install "${ERT_SOURCE_ROOT}[dev]"
 }
 
 run_ctest () {

ci/testkomodo.sh

@@ -12,7 +12,7 @@ copy_test_files () {
 }
 
 install_test_dependencies () {
-    pip install -r dev-requirements.txt
+    pip install "ert[dev]"
 }
 
 run_ert_with_opm () {