Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

add refresher delays episode #154

Merged
merged 52 commits into from
Nov 12, 2024
Merged
Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
52 commits
Select commit Hold shift + click to select a range
4aa0865
add a delays refresher wit hR episode
avallecam Nov 4, 2024
321c34f
add linelist data
avallecam Nov 4, 2024
ee28c6d
remove introduction episode
avallecam Nov 4, 2024
a2e0526
add summative to episode
avallecam Nov 4, 2024
729971a
update renv lock file
avallecam Nov 4, 2024
1e9ffd5
update linelist dataset
avallecam Nov 5, 2024
948ea8a
arrange episode content for planned narrative
avallecam Nov 5, 2024
f067b3f
add challenge and isolate ending in testimonial
avallecam Nov 5, 2024
83241ec
fix lintr checks
avallecam Nov 5, 2024
da6d28b
add checklist for project, quarto, reprex
avallecam Nov 5, 2024
a194fe8
fix plot outputs and writing statements
avallecam Nov 6, 2024
93fabee
write intro and add reference
avallecam Nov 6, 2024
acd3005
add text to explore data section
avallecam Nov 7, 2024
cb62acf
remove namespace only packages
avallecam Nov 7, 2024
7c812fc
replace callout boxes headings and content
avallecam Nov 7, 2024
f042498
add episode title
avallecam Nov 7, 2024
f349141
complete section on severity
avallecam Nov 7, 2024
c57c9d7
complete calculate delays section
avallecam Nov 7, 2024
3e93100
fix lintr checks
avallecam Nov 7, 2024
fed0682
fix content after rendering review
avallecam Nov 7, 2024
e1f0ccc
add list of operators
avallecam Nov 7, 2024
d4329dc
write partial visualization of transmission
avallecam Nov 7, 2024
4c3e6cc
change content in delays as a follow up from cfr
avallecam Nov 7, 2024
4227037
complete visualization section
avallecam Nov 7, 2024
16dcc71
complete fit section
avallecam Nov 7, 2024
a762eb6
finish the checklist about R operators
avallecam Nov 7, 2024
de072b6
add figure of distribution functions in R
avallecam Nov 7, 2024
a16165a
add inference step
avallecam Nov 7, 2024
537de21
fix lintr checks
avallecam Nov 7, 2024
55b7545
update questions to only delays
avallecam Nov 7, 2024
3544abd
checked questions and objectives
Degoot-AM Nov 8, 2024
c72772e
add xlsx file
Degoot-AM Nov 8, 2024
8c56d67
adjusted data discussion section
Degoot-AM Nov 8, 2024
9a22aca
move double-colon checklist up
Degoot-AM Nov 8, 2024
d10446e
adjusted cfr section
Degoot-AM Nov 8, 2024
a0698d1
add csv file
Degoot-AM Nov 8, 2024
f3611dd
final edit
Degoot-AM Nov 8, 2024
5fe92f5
move double colon callout after loading packages
avallecam Nov 12, 2024
6e2e325
remove scan data
avallecam Nov 12, 2024
7ef0236
add context about missing observations for cfr
avallecam Nov 12, 2024
69706a9
remove as.date
avallecam Nov 12, 2024
dcd82b7
add suggestion to instructors
avallecam Nov 12, 2024
15c3d83
add notes about epidemic curve truncation
avallecam Nov 12, 2024
77f0036
print output of library to explain double colon
avallecam Nov 12, 2024
06de00d
simplify here explanation
avallecam Nov 12, 2024
f8aeb7f
clarify writing in episode sections
avallecam Nov 12, 2024
97e8ca8
add visuals to explain from delays to probability
avallecam Nov 12, 2024
1933983
fix access to parameters in text and solution
avallecam Nov 12, 2024
7c18a57
add figures to repository
avallecam Nov 12, 2024
dc6dd0a
add next tutorial links at end of episode
avallecam Nov 12, 2024
1b8d67f
increase alpha
avallecam Nov 12, 2024
520fdd6
fix spoiler reference
avallecam Nov 12, 2024
File filter

Filter by extension

Filter by extension

Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
6 changes: 3 additions & 3 deletions config.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -59,8 +59,8 @@ contact: '[email protected]'

# Order of episodes in your lesson
episodes:
# - template.Rmd
- introduction.Rmd
#- introduction.Rmd
- delays-refresher.Rmd

# Information for Learners
learners:
Expand All @@ -76,6 +76,6 @@ profiles:
# This space below is where custom yaml items (e.g. pinning
# sandpaper and varnish versions) should live


varnish: epiverse-trace/varnish@epiversetheme
# this is carpentries/sandpaper#533 in our fork so we can keep it up to date with main
sandpaper: epiverse-trace/sandpaper@patch-renv-github-bug
167 changes: 167 additions & 0 deletions episodes/data/linelist.csv

Large diffs are not rendered by default.

Binary file added episodes/data/linelist.rds
Binary file not shown.
Binary file added episodes/data/linelist.xlsx
Binary file not shown.
Loading
Loading