Skip to content

Commit

Permalink
site deploy
Browse files Browse the repository at this point in the history
Auto-generated via {sandpaper}
Source  : 2cfa2eb
Branch  : md-outputs
Author  : GitHub Actions <[email protected]>
Time    : 2023-12-26 00:33:43 +0000
Message : markdown source builds

Auto-generated via {sandpaper}
Source  : 5c76e4e
Branch  : main
Author  : Amanda Minter <[email protected]>
Time    : 2023-12-21 14:05:03 +0000
Message : update late tasks from feedback (#85)

* Extend challenge in 'Choosing an appropriate model'

* Edit to accounting for uncertainty example

Store all results and then extract infectious compartment for plotting

* Add detail to Ebola case study challenge

* update glossary entries

* Add callout on ODE solver

* clarify purpose of concept dependencies

* Updates from review

* Remove infection object

* Update simulating-transmission.Rmd

* Update model-choices.Rmd

* Add exercise to `compare_interventions.Rmd`

* update modelling interventions after review

* Update renv.lock

* update plots

* make uncertainty plots consistent across episodes

* fix broken link

* making plots consistent across tutorials

* update summary and key points

* update plots and add challenge

* update introduction

* move contact matrix callout

and clarify reduction is performed within the model functions

* add callout on intervention types

* update introduction and reorder text in other sections

* update PI section

* style code

* spell check

* Update compare-interventions.Rmd

* Apply suggestions from code review

Co-authored-by: Andree Valle Campos <[email protected]>

* Update episodes/modelling-interventions.Rmd

Co-authored-by: Andree Valle Campos <[email protected]>

* add dropdown menus to make section more interactive

* add reminder about transmissibility calculation

* link to latent period

* update model terms

* add note on flow diagram

* add callout on model rates

* Update episodes/simulating-transmission.Rmd

Co-authored-by: Andree Valle Campos <[email protected]>

* Update episodes/simulating-transmission.Rmd

Co-authored-by: Andree Valle Campos <[email protected]>

* Update episodes/simulating-transmission.Rmd

Co-authored-by: Andree Valle Campos <[email protected]>

* Update episodes/simulating-transmission.Rmd

Co-authored-by: Andree Valle Campos <[email protected]>

* Update episodes/simulating-transmission.Rmd

Co-authored-by: Andree Valle Campos <[email protected]>

* update tutorial objectives

* distinguish parameter definitions from process descriptions in flow diagram

* Update model-choices.Rmd

* remove pak call from set up

* Update renv.lock

---------

Co-authored-by: Andree Valle Campos <[email protected]>
  • Loading branch information
actions-user and avallecam committed Jan 9, 2024
1 parent 767b605 commit 8aae339
Show file tree
Hide file tree
Showing 29 changed files with 49 additions and 49 deletions.
4 changes: 2 additions & 2 deletions 404.html

Some generated files are not rendered by default. Learn more about how customized files appear on GitHub.

2 changes: 1 addition & 1 deletion CODE_OF_CONDUCT.html

Some generated files are not rendered by default. Learn more about how customized files appear on GitHub.

2 changes: 1 addition & 1 deletion LICENSE.html

Some generated files are not rendered by default. Learn more about how customized files appear on GitHub.

6 changes: 3 additions & 3 deletions aio.html

Some generated files are not rendered by default. Learn more about how customized files appear on GitHub.

2 changes: 1 addition & 1 deletion compare-interventions.html

Some generated files are not rendered by default. Learn more about how customized files appear on GitHub.

4 changes: 2 additions & 2 deletions images.html

Some generated files are not rendered by default. Learn more about how customized files appear on GitHub.

4 changes: 2 additions & 2 deletions index.html

Some generated files are not rendered by default. Learn more about how customized files appear on GitHub.

4 changes: 2 additions & 2 deletions instructor-notes.html

Some generated files are not rendered by default. Learn more about how customized files appear on GitHub.

4 changes: 2 additions & 2 deletions instructor/404.html

Some generated files are not rendered by default. Learn more about how customized files appear on GitHub.

2 changes: 1 addition & 1 deletion instructor/CODE_OF_CONDUCT.html

Some generated files are not rendered by default. Learn more about how customized files appear on GitHub.

2 changes: 1 addition & 1 deletion instructor/LICENSE.html

Some generated files are not rendered by default. Learn more about how customized files appear on GitHub.

8 changes: 4 additions & 4 deletions instructor/aio.html

Some generated files are not rendered by default. Learn more about how customized files appear on GitHub.

2 changes: 1 addition & 1 deletion instructor/compare-interventions.html

Some generated files are not rendered by default. Learn more about how customized files appear on GitHub.

4 changes: 2 additions & 2 deletions instructor/images.html

Some generated files are not rendered by default. Learn more about how customized files appear on GitHub.

4 changes: 2 additions & 2 deletions instructor/index.html

Some generated files are not rendered by default. Learn more about how customized files appear on GitHub.

4 changes: 2 additions & 2 deletions instructor/instructor-notes.html

Some generated files are not rendered by default. Learn more about how customized files appear on GitHub.

4 changes: 2 additions & 2 deletions instructor/key-points.html

Some generated files are not rendered by default. Learn more about how customized files appear on GitHub.

2 changes: 1 addition & 1 deletion instructor/model-choices.html

Some generated files are not rendered by default. Learn more about how customized files appear on GitHub.

2 changes: 1 addition & 1 deletion instructor/modelling-interventions.html

Some generated files are not rendered by default. Learn more about how customized files appear on GitHub.

4 changes: 2 additions & 2 deletions instructor/profiles.html

Some generated files are not rendered by default. Learn more about how customized files appear on GitHub.

2 changes: 1 addition & 1 deletion instructor/reference.html

Some generated files are not rendered by default. Learn more about how customized files appear on GitHub.

6 changes: 3 additions & 3 deletions instructor/simulating-transmission.html

Some generated files are not rendered by default. Learn more about how customized files appear on GitHub.

4 changes: 2 additions & 2 deletions key-points.html

Some generated files are not rendered by default. Learn more about how customized files appear on GitHub.

2 changes: 1 addition & 1 deletion model-choices.html

Some generated files are not rendered by default. Learn more about how customized files appear on GitHub.

2 changes: 1 addition & 1 deletion modelling-interventions.html

Some generated files are not rendered by default. Learn more about how customized files appear on GitHub.

2 changes: 1 addition & 1 deletion pkgdown.yml
Original file line number Diff line number Diff line change
Expand Up @@ -2,5 +2,5 @@ pandoc: 2.19.2
pkgdown: 2.0.7
pkgdown_sha: ~
articles: {}
last_built: 2024-01-02T00:34Z
last_built: 2024-01-09T00:35Z

4 changes: 2 additions & 2 deletions profiles.html

Some generated files are not rendered by default. Learn more about how customized files appear on GitHub.

2 changes: 1 addition & 1 deletion reference.html

Some generated files are not rendered by default. Learn more about how customized files appear on GitHub.

4 changes: 2 additions & 2 deletions simulating-transmission.html

Some generated files are not rendered by default. Learn more about how customized files appear on GitHub.

0 comments on commit 8aae339

Please sign in to comment.