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Setup page #64

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Jun 17, 2024
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Setup page #64

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organize table of episode
Degoot-AM Apr 18, 2024
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avallecam Jun 17, 2024
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Expand Up @@ -33,17 +33,18 @@ Also check out the [glossary](../reference.md) for any terms you may be unfamili

### Epiverse-TRACE R packages

Our strategy is to gradually incorporate specialised **R packages** into our traditional analysis pipeline. These packages should fill the gaps in these epidemiology-specific tasks in response to outbreaks.
Our strategy is to gradually incorporate specialised **R packages** into traditional analysis pipeline. These packages should fill the gaps in these epidemiology-specific tasks in response to outbreaks.
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![In **R**, the fundamental unit of shareable code is the **package**. A package bundles together code, data, documentation, and tests and is easy to share with others ([Wickham and Bryan, 2023](https://r-pkgs.org/introduction.html))](episodes/fig/pkgs-hexlogos-2.png)
![In **R**, the fundamental unit of shareable code is the **package**. A package bundles together code, data, documentation, and tests and is easy to share with others ([Wickham and Bryan, 2023](https://r-pkgs.org/introduction.html))](episodes/fig/pkgs-hexlogos-2.png).

:::::::::::::::::::::::::::: prereq

This course assumes intermediate R knowledge. This workshop is for you if:

- You can use the magrittr pipe `%>%` and/or native pipe `|>`
- You are familiar with functions from `{dplyr}`, `{tidyr}`, and `{ggplot2}`
- You can read data into R, transform and reshape data, and make a wide variety of graphs
- You are familiar with functions from `{dplyr}`, `{tidyr}`, and `{ggplot2}`
- You can use the magrittr pipe `%>%` and/or native pipe `|>`.


We expect participants to have some exposure to basic Statistical, Mathematical and Epidemic theory concepts, but NOT intermediate or expert familiarity with modeling.

Expand Down Expand Up @@ -74,7 +75,7 @@ This tutorial requires **R version 4.0.0 or later**.

To check if your R version is up to date:

- In RStudio your R version will be printed in [the console window](https://docs.posit.co/ide/user/ide/guide/code/console.html). Or run `sessionInfo()` there.
- In RStudio your R version will be printed in [the console window](https://docs.posit.co/ide/user/ide/guide/code/console.html). Or run `sessionInfo()`.

- **To update R**, download and install the latest version from the [R project website](https://cran.rstudio.com/) for your operating system.

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