sivirep 1.0.1

sivirep 1.0.1

This patch release fixes the following items::

• es_ES was replaced with es-ES in the DESCRIPTION file.

• Updated function examples that require data import and
  use the cache parameter with if (interactive()) to prevent an increase in the package's size
  on CRAN.

• Rename the report template Reporte Basico to Reporte Evento and update the documentation.

sivirep 1.0.0

This major release introduces a variety of significant new features and addresses bugs identified in previous versions of the package. The updates are based on usability testing and the expert review process conducted with Colombia's National Institute of Health.

New features

Incidence:

Set of functions to import, group, and plot the incidence calculations of a specific disease or event for Colombia, departments, or municipalities

• import_pob_incidencia()
• import_pob_proyecciones()
• import_pob_riesgo()
• calcular_incidencia()
• calcular_incidencia_geo()
• calcular_incidencia_sex()
• plot_tabla_incidencia_geo()
• plot_tabla_incidencia_sex()

Ethnicity

Functions to generated the cases distribution, and plot of the ethnicity groups related to a specific disease or event

• agrupar_per_etn()
• plot_per_etn()

Intial classification of cases

Functions to group, and plot the initial classification of cases

• agrupar_tipo_caso()
• plot_tipo_caso()
• plot_tipo_caso_years()

Years (restrospective)

Functions to generate the distribution of cases, and plot across multiple years

• agrupar_years()
• plot_years()

Events

Functions to generate the distribution of cases by event type

• agrupar_events()
• plot_tabla_tipos_event()

Geographic Area

Functions to generate and plot the distribution of cases by geographic area, including top departments or municipalities.

• agrupar_area_geo()
• agrupar_top_area_geo()
• plot_area_geo
• plot_top_area_geo

Report template:

The report template Reporte Evento now includes five new sections called:

• Distribución de casos
• Distribución de casos por clasificación
• Distribución por área geográfica
• Distribución por pertenencia étnica
• Incidencia