Adapt content to outbreak context and R packages #24
Workflow file for this run
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| name: "Receive Pull Request" | |
| on: | |
| pull_request: | |
| types: | |
| [opened, synchronize, reopened] | |
| concurrency: | |
| group: ${{ github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| test-pr: | |
| name: "Record PR number" | |
| if: ${{ github.event.action != 'closed' }} | |
| runs-on: ubuntu-latest | |
| outputs: | |
| is_valid: ${{ steps.check-pr.outputs.VALID }} | |
| steps: | |
| - name: "Record PR number" | |
| id: record | |
| if: ${{ always() }} | |
| run: | | |
| echo ${{ github.event.number }} > ${{ github.workspace }}/NR # 2022-03-02: artifact name fixed to be NR | |
| - name: "Upload PR number" | |
| id: upload | |
| if: ${{ always() }} | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: pr | |
| path: ${{ github.workspace }}/NR | |
| - name: "Get Invalid Hashes File" | |
| id: hash | |
| run: | | |
| echo "json<<EOF | |
| $(curl -sL https://files.carpentries.org/invalid-hashes.json) | |
| EOF" >> $GITHUB_OUTPUT | |
| - name: "echo output" | |
| run: | | |
| echo "${{ steps.hash.outputs.json }}" | |
| - name: "Check PR" | |
| id: check-pr | |
| uses: carpentries/actions/check-valid-pr@main | |
| with: | |
| pr: ${{ github.event.number }} | |
| invalid: ${{ fromJSON(steps.hash.outputs.json)[github.repository] }} | |
| build-md-source: | |
| name: "Build markdown source files if valid" | |
| needs: test-pr | |
| runs-on: ubuntu-latest | |
| if: ${{ needs.test-pr.outputs.is_valid == 'true' }} | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| RENV_PATHS_ROOT: ~/.local/share/renv/ | |
| CHIVE: ${{ github.workspace }}/site/chive | |
| PR: ${{ github.workspace }}/site/pr | |
| MD: ${{ github.workspace }}/site/built | |
| steps: | |
| - name: "Check Out Main Branch" | |
| uses: actions/checkout@v3 | |
| - name: "Check Out Staging Branch" | |
| uses: actions/checkout@v3 | |
| with: | |
| ref: md-outputs | |
| path: ${{ env.MD }} | |
| - name: "Set up R" | |
| uses: r-lib/actions/setup-r@v2 | |
| with: | |
| use-public-rspm: true | |
| install-r: false | |
| - name: "Set up Pandoc" | |
| uses: r-lib/actions/setup-pandoc@v2 | |
| - name: "Setup Lesson Engine" | |
| uses: carpentries/actions/setup-sandpaper@main | |
| with: | |
| cache-version: ${{ secrets.CACHE_VERSION }} | |
| - name: "Setup Package Cache" | |
| uses: carpentries/actions/setup-lesson-deps@main | |
| with: | |
| cache-version: ${{ secrets.CACHE_VERSION }} | |
| - name: "Validate and Build Markdown" | |
| id: build-site | |
| run: | | |
| sandpaper::package_cache_trigger(TRUE) | |
| sandpaper::validate_lesson(path = '${{ github.workspace }}') | |
| sandpaper:::build_markdown(path = '${{ github.workspace }}', quiet = FALSE) | |
| shell: Rscript {0} | |
| - name: "Generate Artifacts" | |
| id: generate-artifacts | |
| run: | | |
| sandpaper:::ci_bundle_pr_artifacts( | |
| repo = '${{ github.repository }}', | |
| pr_number = '${{ github.event.number }}', | |
| path_md = '${{ env.MD }}', | |
| path_pr = '${{ env.PR }}', | |
| path_archive = '${{ env.CHIVE }}', | |
| branch = 'md-outputs' | |
| ) | |
| shell: Rscript {0} | |
| - name: "Upload PR" | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: pr | |
| path: ${{ env.PR }} | |
| - name: "Upload Diff" | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: diff | |
| path: ${{ env.CHIVE }} | |
| retention-days: 1 | |
| - name: "Upload Build" | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: built | |
| path: ${{ env.MD }} | |
| retention-days: 1 | |
| - name: "Teardown" | |
| run: sandpaper::reset_site() | |
| shell: Rscript {0} |