#2615 - Export to three letter amino acid codes cause convert error #4997
AliaksandrDziarkachindigo-ci.yaml
on: pull_request
static_analysis
1m 46s
Matrix: build_indigo_libs_aarch64
Matrix: build_indigo_libs_i386
Matrix: build_indigo_libs_x86_64
build_indigo_windows_mingw_x86_64
9m 41s
build_indigo_ketcher_cjk
4m 56s
build_bingo_oracle_linux_x86_64
3m 43s
build_bingo_oracle_windows_mingw_x86_64
5m 56s
build_bingo_oracle_windows_msvc_x86_64
6m 19s
Matrix: build_bingo_postgres_linux_x86_64
Matrix: build_bingo_postgres_macos_x86_64
Matrix: build_bingo_postgres_windows_msvc_x86_64
Matrix: build_bingo_sqlserver_windows_msvc_x86_64
Matrix: build_indigo_utils_x86_64
Matrix: build_indigo_wrappers
Matrix: test_bingo_elastic_java_linux_x86_64
Matrix: test_bingo_elastic_python_linux_x86_64
Matrix: test_indigo_dotnet_i386
Matrix: test_indigo_dotnet_x86_64
Matrix: test_indigo_java_aarch64
Matrix: test_indigo_java_i386
Matrix: test_indigo_java_x86_64
Matrix: test_indigo_python_aarch64
Matrix: test_indigo_python_i386
Matrix: test_indigo_python_x86_64
build_test_publish_indigo_service_old
1m 41s
build_test_publish_indigo_service_new
47s
publish_indigo_to_pypi
0s
publish_indigo_to_nuget
0s
publish_indigo_to_npm
0s
publish_indigo_to_maven
0s
Annotations
20 errors and 62 warnings
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build_indigo_ketcher_cjk
Process completed with exit code 2.
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build_indigo_ketcher
Process completed with exit code 2.
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test_bingo_elastic_java_linux_x86_64 (1.11)
The run was canceled by @AliaksandrDziarkach.
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test_bingo_elastic_java_linux_x86_64 (1.11)
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test_indigo_python_x86_64 (windows-latest)
The run was canceled by @AliaksandrDziarkach.
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test_indigo_python_x86_64 (windows-latest)
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test_indigo_java_x86_64 (windows-latest)
The run was canceled by @AliaksandrDziarkach.
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test_indigo_java_x86_64 (windows-latest)
The operation was canceled.
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test_indigo_dotnet_x86_64 (windows-latest)
The run was canceled by @AliaksandrDziarkach.
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test_indigo_dotnet_x86_64 (windows-latest)
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test_indigo_python_x86_64 (ubuntu-latest)
The run was canceled by @AliaksandrDziarkach.
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test_indigo_python_x86_64 (ubuntu-latest)
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test_indigo_java_x86_64 (ubuntu-latest)
The run was canceled by @AliaksandrDziarkach.
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test_indigo_java_x86_64 (ubuntu-latest)
The operation was canceled.
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test_indigo_dotnet_x86_64 (macos-13)
The run was canceled by @AliaksandrDziarkach.
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test_indigo_dotnet_x86_64 (macos-13)
The operation was canceled.
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test_indigo_java_x86_64 (macos-13)
The run was canceled by @AliaksandrDziarkach.
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test_indigo_java_x86_64 (macos-13)
The operation was canceled.
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test_indigo_python_x86_64 (macos-13)
The run was canceled by @AliaksandrDziarkach.
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test_indigo_python_x86_64 (macos-13)
The operation was canceled.
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static_analysis
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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build_bingo_oracle_linux_x86_64
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, actions/upload-artifact@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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build_indigo_ketcher_cjk
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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build_indigo_ketcher
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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build_bingo_oracle_windows_mingw_x86_64
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, actions/upload-artifact@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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build_bingo_oracle_windows_msvc_x86_64
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, actions/upload-artifact@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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build_bingo_postgres_windows_msvc_x86_64 (13)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, actions/upload-artifact@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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build_bingo_postgres_windows_msvc_x86_64 (12)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, actions/upload-artifact@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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build_bingo_sqlserver_windows_msvc_x86_64 (windows-latest)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, actions/upload-artifact@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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build_bingo_postgres_windows_msvc_x86_64 (15)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, actions/upload-artifact@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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build_indigo_libs_aarch64 (ubuntu-latest)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, actions/upload-artifact@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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build_bingo_postgres_windows_msvc_x86_64 (14)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, actions/upload-artifact@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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build_bingo_postgres_linux_x86_64 (14)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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build_bingo_postgres_linux_x86_64 (14)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, actions/setup-python@v2, actions/upload-artifact@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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build_bingo_postgres_linux_x86_64 (13)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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build_bingo_postgres_linux_x86_64 (13)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, actions/setup-python@v2, actions/upload-artifact@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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build_bingo_postgres_linux_x86_64 (15)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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build_bingo_postgres_linux_x86_64 (15)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, actions/setup-python@v2, actions/upload-artifact@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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build_bingo_postgres_linux_x86_64 (12)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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build_bingo_postgres_linux_x86_64 (12)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, actions/setup-python@v2, actions/upload-artifact@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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build_bingo_postgres_macos_x86_64 (12)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, actions/upload-artifact@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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build_indigo_libs_aarch64 (macos-13)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, actions/upload-artifact@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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build_indigo_libs_x86_64 (ubuntu-latest)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, actions/upload-artifact@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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build_indigo_utils_x86_64 (ubuntu-latest)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, actions/upload-artifact@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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build_bingo_postgres_macos_x86_64 (14)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, actions/upload-artifact@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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build_bingo_postgres_macos_x86_64 (13)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, actions/upload-artifact@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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build_bingo_postgres_macos_x86_64 (15)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, actions/upload-artifact@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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build_indigo_libs_i386 (windows-latest)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, actions/upload-artifact@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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build_indigo_libs_x86_64 (macos-13)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, actions/upload-artifact@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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build_indigo_utils_x86_64 (windows-latest)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, actions/upload-artifact@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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build_indigo_libs_x86_64 (windows-latest)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, actions/upload-artifact@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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build_indigo_windows_mingw_x86_64
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, actions/upload-artifact@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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build_indigo_wrappers (dotnet)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, actions/download-artifact@v3, actions/upload-artifact@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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build_indigo_wrappers (java)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, actions/download-artifact@v3, actions/upload-artifact@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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build_indigo_wrappers (python)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, actions/download-artifact@v3, actions/upload-artifact@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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build_indigo_wrappers (python)
Failed to download action 'https://api.github.com/repos/actions/download-artifact/tarball/9bc31d5ccc31df68ecc42ccf4149144866c47d8a'. Error: The request was canceled due to the configured HttpClient.Timeout of 100 seconds elapsing.
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build_indigo_wrappers (python)
Back off 23.537 seconds before retry.
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build_indigo_wrappers (python)
Failed to download action 'https://api.github.com/repos/actions/download-artifact/tarball/9bc31d5ccc31df68ecc42ccf4149144866c47d8a'. Error: The request was canceled due to the configured HttpClient.Timeout of 100 seconds elapsing.
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build_indigo_wrappers (python)
Back off 25.078 seconds before retry.
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test_bingo_elastic_java_linux_x86_64 (1.11)
Your workflow is using a version of actions/cache that is scheduled for deprecation, actions/cache@v2. Please update your workflow to use the latest version of actions/cache to avoid interruptions. Learn more: https://github.blog/changelog/2024-09-16-notice-of-upcoming-deprecations-and-changes-in-github-actions-services/
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test_bingo_elastic_java_linux_x86_64 (1.8)
Your workflow is using a version of actions/cache that is scheduled for deprecation, actions/cache@v2. Please update your workflow to use the latest version of actions/cache to avoid interruptions. Learn more: https://github.blog/changelog/2024-09-16-notice-of-upcoming-deprecations-and-changes-in-github-actions-services/
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test_indigo_dotnet_i386 (windows-latest)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, actions/download-artifact@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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build_test_publish_indigo_service_new
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, actions/download-artifact@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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test_indigo_python_i386 (windows-latest)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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test_indigo_python_i386 (windows-latest)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, actions/download-artifact@v3, actions/setup-python@v2, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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test_indigo_java_i386 (windows-latest)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/setup-java@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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test_indigo_java_i386 (windows-latest)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, actions/download-artifact@v3, actions/setup-java@v2, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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build_test_publish_indigo_service_old
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, actions/download-artifact@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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build_indigo_utils_x86_64 (macos-13)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, actions/upload-artifact@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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test_indigo_python_aarch64 (ubuntu-latest)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, actions/download-artifact@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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test_bingo_elastic_python_linux_x86_64 (3.10)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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test_bingo_elastic_python_linux_x86_64 (3.10)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, actions/setup-python@v2, actions/download-artifact@v3, actions/upload-artifact@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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test_bingo_elastic_python_linux_x86_64 (3.10)
Unexpected input(s) 'lfs', 'fetch-depth', valid inputs are ['python-version', 'cache', 'architecture', 'token', 'cache-dependency-path']
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test_bingo_elastic_python_linux_x86_64 (3.10)
Unexpected input(s) 'lfs', 'fetch-depth', valid inputs are ['python-version', 'cache', 'architecture', 'token', 'cache-dependency-path']
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test_bingo_elastic_python_linux_x86_64 (3.9)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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test_bingo_elastic_python_linux_x86_64 (3.9)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, actions/setup-python@v2, actions/download-artifact@v3, actions/upload-artifact@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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test_bingo_elastic_python_linux_x86_64 (3.9)
Unexpected input(s) 'lfs', 'fetch-depth', valid inputs are ['python-version', 'cache', 'architecture', 'token', 'cache-dependency-path']
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test_bingo_elastic_python_linux_x86_64 (3.9)
Unexpected input(s) 'lfs', 'fetch-depth', valid inputs are ['python-version', 'cache', 'architecture', 'token', 'cache-dependency-path']
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test_indigo_java_aarch64 (ubuntu-latest)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, actions/download-artifact@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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test_bingo_elastic_java_linux_x86_64 (1.8)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/setup-java@v1, actions/cache@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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test_bingo_elastic_java_linux_x86_64 (1.8)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, actions/setup-java@v1, actions/cache@v2, actions/download-artifact@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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Deprecation notice: v1, v2, and v3 of the artifact actions
The following artifacts were uploaded using a version of actions/upload-artifact that is scheduled for deprecation: "bingo-elastic-python", "bingo-oracle-linux-x86_64", "bingo-oracle-windows-mingw-x86_64", "bingo-oracle-windows-msvc-x86_64", "bingo-postgres-12-linux-x86_64", "bingo-postgres-12-macos-x86_64", "bingo-postgres-12-windows-x86_64", "bingo-postgres-13-linux-x86_64", "bingo-postgres-13-macos-x86_64", "bingo-postgres-13-windows-x86_64", "bingo-postgres-14-linux-x86_64", "bingo-postgres-14-macos-x86_64", "bingo-postgres-14-windows-x86_64", "bingo-postgres-15-linux-x86_64", "bingo-postgres-15-macos-x86_64", "bingo-postgres-15-windows-x86_64", "bingo-sqlserver-windows-latest-x86_64", "indigo-dotnet", "indigo-java", "indigo-libs-linux-aarch64", "indigo-libs-linux-x86_64", "indigo-libs-macos-aarch64", "indigo-libs-macos-x86_64", "indigo-libs-windows-i386", "indigo-libs-windows-mingw-x86_64", "indigo-libs-windows-x86_64", "indigo-native-shared-libs", "indigo-python", "indigo-utils-linux-x86_64", "indigo-utils-macos-x86_64", "indigo-utils-windows-x86_64".
Please update your workflow to use v4 of the artifact actions.
Learn more: https://github.blog/changelog/2024-04-16-deprecation-notice-v3-of-the-artifact-actions/
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Artifacts
Produced during runtime
| Name | Size | |
|---|---|---|
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bingo-elastic-python
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41.3 MB |
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bingo-oracle-linux-x86_64
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4.39 MB |
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bingo-oracle-windows-mingw-x86_64
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4.52 MB |
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bingo-oracle-windows-msvc-x86_64
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2.47 MB |
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bingo-postgres-12-linux-x86_64
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4.43 MB |
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bingo-postgres-12-macos-x86_64
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3.48 MB |
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bingo-postgres-12-windows-x86_64
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2.44 MB |
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bingo-postgres-13-linux-x86_64
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4.43 MB |
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bingo-postgres-13-macos-x86_64
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3.48 MB |
|
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bingo-postgres-13-windows-x86_64
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2.44 MB |
|
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bingo-postgres-14-linux-x86_64
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4.43 MB |
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bingo-postgres-14-macos-x86_64
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3.48 MB |
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bingo-postgres-14-windows-x86_64
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2.44 MB |
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bingo-postgres-15-linux-x86_64
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4.43 MB |
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bingo-postgres-15-macos-x86_64
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3.48 MB |
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bingo-postgres-15-windows-x86_64
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2.44 MB |
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bingo-sqlserver-windows-latest-x86_64
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2.4 MB |
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indigo-dotnet
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41.1 MB |
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indigo-java
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82.4 MB |
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indigo-libs-linux-aarch64
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20.1 MB |
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indigo-libs-linux-x86_64
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21.1 MB |
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indigo-libs-macos-aarch64
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13.2 MB |
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indigo-libs-macos-x86_64
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14.5 MB |
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indigo-libs-windows-i386
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17.2 MB |
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indigo-libs-windows-mingw-x86_64
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90.3 MB |
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indigo-libs-windows-x86_64
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18.4 MB |
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indigo-native-shared-libs
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105 MB |
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indigo-python
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41.3 MB |
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indigo-utils-linux-x86_64
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38.8 MB |
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indigo-utils-macos-x86_64
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34.6 MB |
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indigo-utils-windows-x86_64
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26 MB |
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