IDMP Ontology Release 1.2.0
Ontology Development in Details
This quarter our focus was on bug fixing, usability, and simplification, in preparation for extensions supporting additional use cases in Q3. Analysis done over several weeks led to the conclusion that certain constructs, including some related to packaging, could be simplified for ease of use as well as to increase representation and reasoning efficiency. Because of the complexity involved not only in the ontology but in the IDMP standards, we are unwinding certain parts of the ontology incrementally rather than in a single issue. Simplification efforts will continue into Q3, when we will also be adding a number of new constructs. New work will involve fleshing out details for concepts needed for use cases such as the EMA PMS Data Alignment PoC, filling in gaps where there are missing attributes, for example, for some parts of the model.
Qualitative Comparison To Previous Release
Overview
No ontology was added or deleted.
The following ontologies were revised and/or extended:
| Ontologies | Deleted Resources | New Resources | Modified Resources |
|---|---|---|---|
| AmlodipineExample | 0 | 0 | 7 |
| doco | 0 | 0 | 14 |
| DocumentComponents | 0 | 0 | 5 |
| EuropeanRegistrationAuthorities | 0 | 0 | 13 |
| ISO1087-TerminologyScience | 0 | 0 | 1 |
| ISO1087-VocabularyForTermsAndDefinitions | 0 | 0 | 2 |
| ISO11238-RegistrationAuthorities | 0 | 0 | 11 |
| ISO11238-Substances | 0 | 1 | 58 |
| ISO11239-PharmaceuticalDoseForms | 0 | 0 | 4 |
| ISO11615-MedicinalProducts | 3 | 5 | 57 |
| ISO21090-HarmonizedDatatypes | 0 | 0 | 6 |
| Locations | 0 | 0 | 4 |
| MedicalDictionaryForRegulatoryActivities | 0 | 0 | 2 |
| MultipleVocabularyFacility | 0 | 0 | 2 |
| NorthAmericanRegistrationAuthorities | 0 | 0 | 22 |
| Organizations | 0 | 0 | 9 |
| po | 0 | 0 | 8 |
| ProductsAndServices | 0 | 2 | 4 |
| QlairaExample | 0 | 0 | 5 |
| QuantitiesAndUnits | 0 | 2 | 9 |
| RegistrationAuthorities | 0 | 0 | 3 |
| RegulatoryAgencies | 0 | 0 | 4 |
| StatisticalMeasures | 0 | 0 | 3 |
| SubstancesProductsOrganisationsReferentials | 0 | 0 | 1 |
| TerlipressinExample | 0 | 0 | 1 |
Details
idmp_different_resources_in_ontology_revisions.xlsx
idmp_different_axioms_for_same_subjects.txt
What's Changed
- IDMP-GitHub-564 - Textual values for substance names by @ElisaKendall in #566
- IDMP-GitHub-567 - Two typos in reference to rdfs:subPropertyOf by @ElisaKendall in #568
- IDMP-GitHub-573 - Correct a wrong prefix for reference source by @ElisaKendall in #574
- IDMP-GitHub-571 - Simplify the licensing definitions in Commons to facilitate mapping to BFO by @ElisaKendall in #572
- hygiene tests added for prefLabels by @mereolog in #575
- IDMP-734 - Add skos:prefLabel to terms that have multilingual labels by @ElisaKendall in #570
- IDMP-720 - Few SHACL examples added for discussion by @mereolog in #563
- GitHub-589 - Improper references to IDMP resources by @ElisaKendall in #592
- IDMP-GitHub-584 - Loosen constraints on MVF Element to allow for mapping MEDdra terms to those in EMA SPOR and other vocabularies by @ElisaKendall in #585
- GitHub-590 - Missing disjointness axiom on starting material role by @ElisaKendall in #591
- GitHub-587 - "Broken" URLs in IDMPO literals by @ElisaKendall in #593
- GitHub-580: add mvf-trm:Term as parent class for MedDRA term by @tw-osthus in #581
- GitHub-594 - Possibly broken URLs in IDMP Prod literals by @ElisaKendall in #595
- GitHub-586 - Add the additional definitional material for substance from ISO 11238 to the current definition from Commons as annotations by @ElisaKendall in #597
- GitHub-583 - Possible ill-formed definition for MarketingStatusReasonCode by @ElisaKendall in #596
- GitHub-577 - Potentially vicious "circular" restrictions by @ElisaKendall in #600
- GitHub-601 - Modify the SPAR PO ontology to eliminate the SWRL Builtin statements which cannot be processed by certain reasoners by @ElisaKendall in #602
- GitHub-598 - Obsolete restriction on idmp-sub:Amount by @ElisaKendall in #603
- Additional hygiene test for obsolete restrictions by @mereolog in #604
- IDMP-682 - Investigate simplifying potential circularity in population characteristic by @ElisaKendall in #606
- IDMP-748 - Modify the packaging approach to make package roles individuals by @ElisaKendall in #609
- IDMP-738: Fix uri in GSRS transformation files by @aliariff in #610
- Update SPOR transformation files by @aliariff in #612
- Fix Warning in GitHub Actions CI by @aliariff in #611
Full Changelog: master_v1.1.0...master_v1.2.0
