Fix formatting issues #88
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| name: ci | |
| on: | |
| # Trigger the workflow on push to master or develop, except tag creation | |
| push: | |
| branches: | |
| - 'main' | |
| - 'develop' | |
| # Trigger the workflow on pull request | |
| pull_request: ~ | |
| # Trigger the workflow manually | |
| workflow_dispatch: ~ | |
| # Trigger after public PR approved for CI | |
| pull_request_target: | |
| types: [labeled] | |
| release: | |
| types: [created] | |
| jobs: | |
| qa: | |
| name: qa | |
| runs-on: ubuntu-20.04 | |
| steps: | |
| - name: Checkout Repository | |
| uses: actions/checkout@v3 | |
| with: | |
| repository: ${{ inputs.repository }} | |
| ref: ${{ inputs.ref }} | |
| - name: Setup Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ inputs.python_version }} | |
| - name: Install Python Dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| python -m pip install black flake8 isort | |
| - name: Check isort | |
| run: isort --check . | |
| - name: Check black | |
| run: black --check . | |
| - name: Check flake8 | |
| run: flake8 . | |
| setup: | |
| name: setup | |
| runs-on: ubuntu-20.04 | |
| outputs: | |
| matrix: ${{ steps.set-matrix.outputs.matrix }} | |
| inputs: ${{ steps.prepare-inputs.outputs.inputs }} | |
| inputs-for-ubuntu: ${{ steps.prepare-inputs.outputs.inputs-for-ubuntu }} | |
| steps: | |
| - name: Set Matrix | |
| id: set-matrix | |
| shell: bash -eux {0} | |
| run: | | |
| MATRIX=$(cat << 'EOS' | |
| name: | |
| - [email protected] | |
| - [email protected] | |
| include: | |
| - name: [email protected] | |
| os: ubuntu-22.04 | |
| compiler: gnu-11 | |
| compiler_cc: gcc-11 | |
| compiler_cxx: g++-11 | |
| compiler_fc: gfortran-11 | |
| - name: [email protected] | |
| os: ubuntu-22.04 | |
| compiler: clang-14 | |
| compiler_cc: clang-14 | |
| compiler_cxx: clang++-14 | |
| compiler_fc: gfortran-11 | |
| # Xcode compiler requires empty environment variables, so we pass null (~) here | |
| EOS | |
| ) | |
| SKIP_MATRIX_JOBS=$(cat << 'EOS' | |
| ${{ inputs.skip_matrix_jobs }} | |
| EOS | |
| ) | |
| SELECT_NAME_COND="1 != 1" | |
| SELECT_INCLUDE_COND="1 != 1" | |
| for skip_job in $SKIP_MATRIX_JOBS; do SELECT_NAME_COND="$SELECT_NAME_COND or . == \"$skip_job\""; SELECT_INCLUDE_COND="$SELECT_INCLUDE_COND or .name == \"$skip_job\""; done | |
| echo matrix=$(echo "$MATRIX" | yq eval "del(.name[] | select($SELECT_NAME_COND)) | del(.include[] | select($SELECT_INCLUDE_COND))" --output-format json --indent 0 -) >> $GITHUB_OUTPUT | |
| - name: Prepare build-package Inputs | |
| id: prepare-inputs | |
| shell: bash -eux {0} | |
| run: | | |
| echo inputs=$(echo "${{ inputs.build_package_inputs || '{}' }}" | yq eval '.' --output-format json --indent 0 -) >> $GITHUB_OUTPUT | |
| echo inputs-for-ubuntu=$(echo "${{ inputs.build_package_inputs || '{}' }}" | yq eval '. * {"os":"ubuntu-20.04","compiler":"gnu-10","compiler_cc":"gcc-10","compiler_cxx":"g++-10","compiler_fc":"gfortran-10"}' --output-format json --indent 0 -) >> $GITHUB_OUTPUT | |
| test: | |
| name: test | |
| needs: | |
| - qa | |
| - setup | |
| strategy: | |
| fail-fast: false | |
| matrix: ${{ fromJson(needs.setup.outputs.matrix) }} | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Setup Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ inputs.python_version }} | |
| - name: Install Python Dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install --upgrade pip setuptools wheel | |
| python -m pip install pytest pytest-cov | |
| python -m pip install -r requirements.txt | |
| python -m pip install -r ./tests/requirements_test.txt | |
| - name: Verify Source Distribution | |
| shell: bash -eux {0} | |
| run: | | |
| python setup.py sdist | |
| python -m pip install dist/* | |
| - name: Run Tests with Repository Code | |
| env: | |
| LD_LIBRARY_PATH: ${{ steps.install-dependencies.outputs.lib_path }} | |
| shell: bash -eux {0} | |
| run: | | |
| DYLD_LIBRARY_PATH=${{ env.LD_LIBRARY_PATH }} python -m pytest -m "not data" tests --cov=./ --cov-report=xml | |
| python -m coverage report | |
| - name: Upload coverage to Codecov | |
| uses: codecov/codecov-action@v3 | |
| with: | |
| files: coverage.xml | |
| deploy: | |
| needs: test | |
| if: ${{ github.event_name == 'release' }} | |
| name: Upload to Pypi | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: '3.8' | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install setuptools wheel twine | |
| - name: Build and publish | |
| env: | |
| TWINE_USERNAME: "__token__" | |
| TWINE_PASSWORD: ${{ secrets.PYPI_API_TOKEN }} | |
| run: | | |
| python setup.py sdist | |
| twine upload dist/* |