{lib}[GCCcore/13.2.0] imagecodecs v2024.6.1, CharLS v2.4.2, jxrlib v1.1, ... #21929

pavelToman · 2024-11-28T15:59:11Z

(created using eb --new-pr)
requires zlib-ng :

{tools}[GCCcore/13.2.0] bakta v1.10.1, PyHMMER v0.10.15, psutil v6.1.0, versioningit v3.1.2, zlib-ng v2.2.2 #21861

…GCCcore-13.2.0.eb, jxrlib-1.1-GCCcore-13.2.0.eb, libyuv-20241125-GCCcore-13.2.0.eb, libavif-1.1.1-GCCcore-13.2.0.eb, libde265-1.0.15-GCCcore-13.2.0.eb, libheif-1.19.5-GCCcore-13.2.0.eb, LibLZF-3.6-GCCcore-13.2.0.eb, Zopfli-1.0.3-GCCcore-13.2.0.eb, zfp-1.0.1-GCCcore-13.2.0.eb, bitshuffle-0.5.2-foss-2023b.eb

github-actions · 2024-11-28T15:59:55Z

Updated software `bitshuffle-0.5.2-foss-2023b.eb`

Diff against bitshuffle-0.5.1-foss-2023a.eb

easybuild/easyconfigs/b/bitshuffle/bitshuffle-0.5.1-foss-2023a.eb

diff --git a/easybuild/easyconfigs/b/bitshuffle/bitshuffle-0.5.1-foss-2023a.eb b/easybuild/easyconfigs/b/bitshuffle/bitshuffle-0.5.2-foss-2023b.eb
index 3faf7d3a1e..f56e5fa890 100644
--- a/easybuild/easyconfigs/b/bitshuffle/bitshuffle-0.5.1-foss-2023a.eb
+++ b/easybuild/easyconfigs/b/bitshuffle/bitshuffle-0.5.2-foss-2023b.eb
@@ -1,7 +1,7 @@
-easyblock = 'PythonBundle'
+easyblock = 'PythonPackage'
 
 name = 'bitshuffle'
-version = '0.5.1'
+version = '0.5.2'
 
 homepage = 'https://github.com/kiyo-masui/bitshuffle'
 description = """
@@ -12,21 +12,19 @@ The library can be used along side HDF5 to compress and decompress datasets and
 through the dynamically loaded filters framework. Bitshuffle is HDF5 filter number 32008.
 """
 
-toolchain = {'name': 'foss', 'version': '2023a'}
+toolchain = {'name': 'foss', 'version': '2023b'}
+
+sources = [SOURCE_TAR_GZ]
+checksums = ['dc0e3fb7bdbf42be1009cc3028744180600d625a75b31833a24aa32aeaf83d8d']
 
 dependencies = [
-    ('Python', '3.11.3'),
-    ('SciPy-bundle', '2023.07'),
-    ('h5py', '3.9.0'),
+    ('Python', '3.11.5'),
+    ('SciPy-bundle', '2023.11'),
+    ('h5py', '3.11.0'),
 ]
 
 use_pip = True
+download_dep_fail = True
 sanity_pip_check = True
 
-exts_list = [
-    (name, version, {
-        'checksums': ['988f224739aa6858475a4c59172968c7b51cc657d2249580c8f96848708fbae3'],
-    }),
-]
-
 moduleclass = 'lib'

Updated software `CharLS-2.4.2-GCCcore-13.2.0.eb`

Diff against CharLS-2.4.2-GCCcore-12.3.0.eb

easybuild/easyconfigs/c/CharLS/CharLS-2.4.2-GCCcore-12.3.0.eb

diff --git a/easybuild/easyconfigs/c/CharLS/CharLS-2.4.2-GCCcore-12.3.0.eb b/easybuild/easyconfigs/c/CharLS/CharLS-2.4.2-GCCcore-13.2.0.eb
index 9d814bdfc2..3c8d212818 100644
--- a/easybuild/easyconfigs/c/CharLS/CharLS-2.4.2-GCCcore-12.3.0.eb
+++ b/easybuild/easyconfigs/c/CharLS/CharLS-2.4.2-GCCcore-13.2.0.eb
@@ -8,7 +8,7 @@ description = """CharLS is a C++ implementation of the JPEG-LS standard for loss
 compression and decompression. JPEG-LS is a low-complexity image compression standard that matches JPEG 2000
 compression ratios."""
 
-toolchain = {'name': 'GCCcore', 'version': '12.3.0'}
+toolchain = {'name': 'GCCcore', 'version': '13.2.0'}
 toolchainopts = {'pic': True}
 
 source_urls = ['https://github.com/team-charls/charls/archive/']
@@ -17,7 +17,7 @@ checksums = ['d1c2c35664976f1e43fec7764d72755e6a50a80f38eca70fcc7553cad4fe19d9']
 
 builddependencies = [
     ('binutils', '2.40'),
-    ('CMake', '3.26.3')
+    ('CMake', '3.27.6'),
 ]
 
 configopts = '-DBUILD_SHARED_LIBS=ON '

Diff against CharLS-2.4.2-GCCcore-12.2.0.eb

easybuild/easyconfigs/c/CharLS/CharLS-2.4.2-GCCcore-12.2.0.eb

diff --git a/easybuild/easyconfigs/c/CharLS/CharLS-2.4.2-GCCcore-12.2.0.eb b/easybuild/easyconfigs/c/CharLS/CharLS-2.4.2-GCCcore-13.2.0.eb
index 497ee7a3e8..3c8d212818 100644
--- a/easybuild/easyconfigs/c/CharLS/CharLS-2.4.2-GCCcore-12.2.0.eb
+++ b/easybuild/easyconfigs/c/CharLS/CharLS-2.4.2-GCCcore-13.2.0.eb
@@ -8,7 +8,7 @@ description = """CharLS is a C++ implementation of the JPEG-LS standard for loss
 compression and decompression. JPEG-LS is a low-complexity image compression standard that matches JPEG 2000
 compression ratios."""
 
-toolchain = {'name': 'GCCcore', 'version': '12.2.0'}
+toolchain = {'name': 'GCCcore', 'version': '13.2.0'}
 toolchainopts = {'pic': True}
 
 source_urls = ['https://github.com/team-charls/charls/archive/']
@@ -16,8 +16,8 @@ sources = ['%(version)s.tar.gz']
 checksums = ['d1c2c35664976f1e43fec7764d72755e6a50a80f38eca70fcc7553cad4fe19d9']
 
 builddependencies = [
-    ('binutils', '2.39'),
-    ('CMake', '3.24.3')
+    ('binutils', '2.40'),
+    ('CMake', '3.27.6'),
 ]
 
 configopts = '-DBUILD_SHARED_LIBS=ON '

Updated software `imagecodecs-2024.6.1-foss-2023b.eb`

Diff against imagecodecs-2024.1.1-foss-2023a.eb

easybuild/easyconfigs/i/imagecodecs/imagecodecs-2024.1.1-foss-2023a.eb

diff --git a/easybuild/easyconfigs/i/imagecodecs/imagecodecs-2024.1.1-foss-2023a.eb b/easybuild/easyconfigs/i/imagecodecs/imagecodecs-2024.6.1-foss-2023b.eb
index 25c939f062..72d46164bf 100644
--- a/easybuild/easyconfigs/i/imagecodecs/imagecodecs-2024.1.1-foss-2023a.eb
+++ b/easybuild/easyconfigs/i/imagecodecs/imagecodecs-2024.6.1-foss-2023b.eb
@@ -4,71 +4,71 @@
 easyblock = 'PythonBundle'
 
 name = 'imagecodecs'
-version = '2024.1.1'
+version = '2024.6.1'
 
 homepage = 'https://github.com/cgohlke/imagecodecs'
 description = """Imagecodecs is a Python library that provides block-oriented, in-memory buffer transformation,
 compression, and decompression functions for use in the tifffile, czifile, zarr, and other
 scientific image input/output modules."""
 
-toolchain = {'name': 'foss', 'version': '2023a'}
+toolchain = {'name': 'foss', 'version': '2023b'}
 
 local_openjpeg_maj_min = '2.5'
 dependencies = [
-    ('Python', '3.11.3'),
-    ('SciPy-bundle', '2023.07'),
-    ('Cython', '3.0.8'),
-    ('matplotlib', '3.7.2'),
-    ('Brotli', '1.0.9'),
+    ('Python', '3.11.5'),
+    ('SciPy-bundle', '2023.11'),
+    ('Python-bundle-PyPI', '2023.10'),
+    ('Cython', '3.0.10'),
+    ('matplotlib', '3.8.2'),
+    ('Brotli', '1.1.0'),
     ('Blosc', '1.21.5'),
-    ('Blosc2', '2.8.0'),
-    ('CFITSIO', '4.3.0'),
+    ('Blosc2', '2.13.2'),
+    ('Brunsli', '0.1'),
+    ('bzip2', '1.0.8'),
+    ('CFITSIO', '4.3.1'),
     ('CharLS', '2.4.2'),
     ('giflib', '5.2.1'),
     ('jxrlib', '1.1'),
     ('LittleCMS', '2.15'),
     ('LERC', '4.0.0'),
     ('libaec', '1.0.6'),
-    ('libavif', '1.0.4'),
-    ('libdeflate', '1.18'),
-    ('libjpeg-turbo', '2.1.5.1'),
+    ('libavif', '1.1.1'),
+    ('libdeflate', '1.19'),
+    ('libheif', '1.19.5'),
+    ('libjpeg-turbo', '3.0.1'),
     ('libjxl', '0.8.2'),
     ('LibLZF', '3.6'),
-    ('libpng', '1.6.39'),
-    ('LibTIFF', '4.5.0'),
-    ('libwebp', '1.3.1'),
+    ('libpng', '1.6.40'),
+    ('LibTIFF', '4.6.0'),
+    ('libwebp', '1.3.2'),
     ('lz4', '1.9.4'),
     ('OpenJPEG', local_openjpeg_maj_min + '.0'),
     ('snappy', '1.1.10'),
-    ('zlib-ng', '2.1.6'),
+    ('zlib-ng', '2.2.2'),
     ('Zopfli', '1.0.3'),
     ('zfp', '1.0.1'),
     ('zstd', '1.5.5'),
-    ('Brunsli', '0.1'),
-    ('HDF5', '1.14.0'),
-    ('h5py', '3.9.0'),
-    ('libheif', '1.17.6'),
-    ('bitshuffle', '0.5.1'),  # Cannot be as extension because Cython 3.0.8 is too new
+    ('HDF5', '1.14.3'),
+    ('h5py', '3.11.0'),
+    ('bitshuffle', '0.5.2'),
 ]
 
 use_pip = True
 sanity_pip_check = True
 
 exts_list = [
-    ('colorlog', '6.8.2', {
-        'checksums': ['3e3e079a41feb5a1b64f978b5ea4f46040a94f11f0e8bbb8261e3dbbeca64d44'],
+    ('colorlog', '6.9.0', {
+        'checksums': ['bfba54a1b93b94f54e1f4fe48395725a3d92fd2a4af702f6bd70946bdc0c6ac2'],
     }),
     (name, version, {
         'buildopts': '--global-option="build_ext" --global-option="--lite"',
         'extract_cmd': "tar -xvf %s && find . -type f -print0 | xargs -0 dos2unix",
         'patches': ['imagecodecs-2024.1.1_fix-aec-version.patch'],
         'preinstallopts': "export CPATH=$EBROOTOPENJPEG/include/openjpeg-2.5/:$CPATH && ",
-        'source_urls': [
-            'https://github.com/cgohlke/imagecodecs/releases/download/v%(version)s/imagecodecs-2024.1.1.tar.gz'
-        ],
+        'source_urls': ['https://github.com/cgohlke/imagecodecs/releases/download/v%(version)s/'],
         'sources': ['%(name)s-%(version)s.tar.gz'],
         'checksums': [
-            {'imagecodecs-2024.1.1.tar.gz': 'fde46bd698d008255deef5411c59b35c0e875295e835bf6079f7e2ab22f216eb'},
+            {'imagecodecs-2024.6.1.tar.gz': '0f3e94b7f51e2f78287b7ffae82cd850b1007639148894538274fa50bd179886'},
             {'imagecodecs-2024.1.1_fix-aec-version.patch':
              '7feb0a5fe37893d1a186f85c8f6cdb940704605ee2da5ea8e5d555ec5bfa01aa'},
         ],

Diff against imagecodecs-2022.9.26-foss-2022a.eb

easybuild/easyconfigs/i/imagecodecs/imagecodecs-2022.9.26-foss-2022a.eb

diff --git a/easybuild/easyconfigs/i/imagecodecs/imagecodecs-2022.9.26-foss-2022a.eb b/easybuild/easyconfigs/i/imagecodecs/imagecodecs-2024.6.1-foss-2023b.eb
index f33ff8c46b..72d46164bf 100644
--- a/easybuild/easyconfigs/i/imagecodecs/imagecodecs-2022.9.26-foss-2022a.eb
+++ b/easybuild/easyconfigs/i/imagecodecs/imagecodecs-2024.6.1-foss-2023b.eb
@@ -1,69 +1,77 @@
 # This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild
 # Author: Denis Kristak
-# update: Thomas Hoffmann (EMBL), Denis Kristak (Inuits)
+# update: Thomas Hoffmann (EMBL), Denis Kristak (Inuits), Cintia Willemyns (Vrije Universiteit Brussel)
 easyblock = 'PythonBundle'
 
 name = 'imagecodecs'
-version = '2022.9.26'  # opting for older version because of compatibility issues with LibTIFF
+version = '2024.6.1'
 
 homepage = 'https://github.com/cgohlke/imagecodecs'
 description = """Imagecodecs is a Python library that provides block-oriented, in-memory buffer transformation,
 compression, and decompression functions for use in the tifffile, czifile, zarr, and other
 scientific image input/output modules."""
 
-toolchain = {'name': 'foss', 'version': '2022a'}
+toolchain = {'name': 'foss', 'version': '2023b'}
 
 local_openjpeg_maj_min = '2.5'
 dependencies = [
-    ('Python', '3.10.4'),
-    ('SciPy-bundle', '2022.05'),
-    ('matplotlib', '3.5.2'),
-    ('Brotli', '1.0.9'),
+    ('Python', '3.11.5'),
+    ('SciPy-bundle', '2023.11'),
+    ('Python-bundle-PyPI', '2023.10'),
+    ('Cython', '3.0.10'),
+    ('matplotlib', '3.8.2'),
+    ('Brotli', '1.1.0'),
+    ('Blosc', '1.21.5'),
+    ('Blosc2', '2.13.2'),
+    ('Brunsli', '0.1'),
     ('bzip2', '1.0.8'),
-    ('Blosc', '1.21.3'),
-    ('Blosc2', '2.6.1'),
-    ('CFITSIO', '4.2.0'),
-    ('CharLS', '2.4.1'),
+    ('CFITSIO', '4.3.1'),
+    ('CharLS', '2.4.2'),
     ('giflib', '5.2.1'),
     ('jxrlib', '1.1'),
-    ('LittleCMS', '2.13.1'),
+    ('LittleCMS', '2.15'),
     ('LERC', '4.0.0'),
     ('libaec', '1.0.6'),
-    ('libavif', '0.11.1'),
-    ('libdeflate', '1.10'),
-    ('libjpeg-turbo', '2.1.3'),
-    ('libjxl', '0.8.1'),
+    ('libavif', '1.1.1'),
+    ('libdeflate', '1.19'),
+    ('libheif', '1.19.5'),
+    ('libjpeg-turbo', '3.0.1'),
+    ('libjxl', '0.8.2'),
     ('LibLZF', '3.6'),
-    ('libpng', '1.6.37'),
-    ('XZ', '5.2.5'),
-    ('LibTIFF', '4.3.0'),
-    ('libwebp', '1.2.4'),
-    ('lz4', '1.9.3'),
+    ('libpng', '1.6.40'),
+    ('LibTIFF', '4.6.0'),
+    ('libwebp', '1.3.2'),
+    ('lz4', '1.9.4'),
     ('OpenJPEG', local_openjpeg_maj_min + '.0'),
-    ('snappy', '1.1.9'),
-    ('zlib', '1.2.12'),
-    ('zlib-ng', '2.0.7'),
+    ('snappy', '1.1.10'),
+    ('zlib-ng', '2.2.2'),
     ('Zopfli', '1.0.3'),
-    ('zfp', '1.0.0'),
-    ('zstd', '1.5.2'),
-    ('Brunsli', '0.1'),
-    ('HDF5', '1.12.2'),
-    ('h5py', '3.7.0'),
-    ('libheif', '1.16.2'),
+    ('zfp', '1.0.1'),
+    ('zstd', '1.5.5'),
+    ('HDF5', '1.14.3'),
+    ('h5py', '3.11.0'),
+    ('bitshuffle', '0.5.2'),
 ]
 
 use_pip = True
 sanity_pip_check = True
 
 exts_list = [
-    ('bitshuffle', '0.5.1', {
-        'checksums': ['988f224739aa6858475a4c59172968c7b51cc657d2249580c8f96848708fbae3'],
+    ('colorlog', '6.9.0', {
+        'checksums': ['bfba54a1b93b94f54e1f4fe48395725a3d92fd2a4af702f6bd70946bdc0c6ac2'],
     }),
     (name, version, {
+        'buildopts': '--global-option="build_ext" --global-option="--lite"',
         'extract_cmd': "tar -xvf %s && find . -type f -print0 | xargs -0 dos2unix",
+        'patches': ['imagecodecs-2024.1.1_fix-aec-version.patch'],
         'preinstallopts': "export CPATH=$EBROOTOPENJPEG/include/openjpeg-2.5/:$CPATH && ",
+        'source_urls': ['https://github.com/cgohlke/imagecodecs/releases/download/v%(version)s/'],
         'sources': ['%(name)s-%(version)s.tar.gz'],
-        'checksums': ['04d5757d8fd7819844b0f8d9eed05025dca4962f280d0010b42c7c9c993fe371'],
+        'checksums': [
+            {'imagecodecs-2024.6.1.tar.gz': '0f3e94b7f51e2f78287b7ffae82cd850b1007639148894538274fa50bd179886'},
+            {'imagecodecs-2024.1.1_fix-aec-version.patch':
+             '7feb0a5fe37893d1a186f85c8f6cdb940704605ee2da5ea8e5d555ec5bfa01aa'},
+        ],
     }),
 ]

Updated software `jxrlib-1.1-GCCcore-13.2.0.eb`

Diff against jxrlib-1.1-GCCcore-12.3.0.eb

easybuild/easyconfigs/j/jxrlib/jxrlib-1.1-GCCcore-12.3.0.eb

diff --git a/easybuild/easyconfigs/j/jxrlib/jxrlib-1.1-GCCcore-12.3.0.eb b/easybuild/easyconfigs/j/jxrlib/jxrlib-1.1-GCCcore-13.2.0.eb
index f8aeb2b413..a57082eb75 100644
--- a/easybuild/easyconfigs/j/jxrlib/jxrlib-1.1-GCCcore-12.3.0.eb
+++ b/easybuild/easyconfigs/j/jxrlib/jxrlib-1.1-GCCcore-13.2.0.eb
@@ -12,7 +12,7 @@ version = '1.1'
 homepage = 'https://github.com/4creators/jxrlib'
 description = """Open source implementation of jpegxr"""
 
-toolchain = {'name': 'GCCcore', 'version': '12.3.0'}
+toolchain = {'name': 'GCCcore', 'version': '13.2.0'}
 
 source_urls = ['https://deb.debian.org/debian/pool/main/j/jxrlib/']
 sources = ['%(name)s_%(version)s.orig.tar.gz']
@@ -24,7 +24,7 @@ checksums = [
 
 builddependencies = [
     ('binutils', '2.40'),
-    ('CMake', '3.26.3'),
+    ('CMake', '3.27.6'),
 ]
 
 sanity_check_paths = {

Diff against jxrlib-1.1-GCCcore-11.3.0.eb

easybuild/easyconfigs/j/jxrlib/jxrlib-1.1-GCCcore-11.3.0.eb

diff --git a/easybuild/easyconfigs/j/jxrlib/jxrlib-1.1-GCCcore-11.3.0.eb b/easybuild/easyconfigs/j/jxrlib/jxrlib-1.1-GCCcore-13.2.0.eb
index db73ae8495..a57082eb75 100644
--- a/easybuild/easyconfigs/j/jxrlib/jxrlib-1.1-GCCcore-11.3.0.eb
+++ b/easybuild/easyconfigs/j/jxrlib/jxrlib-1.1-GCCcore-13.2.0.eb
@@ -12,7 +12,7 @@ version = '1.1'
 homepage = 'https://github.com/4creators/jxrlib'
 description = """Open source implementation of jpegxr"""
 
-toolchain = {'name': 'GCCcore', 'version': '11.3.0'}
+toolchain = {'name': 'GCCcore', 'version': '13.2.0'}
 
 source_urls = ['https://deb.debian.org/debian/pool/main/j/jxrlib/']
 sources = ['%(name)s_%(version)s.orig.tar.gz']
@@ -23,8 +23,8 @@ checksums = [
 ]
 
 builddependencies = [
-    ('binutils', '2.38'),
-    ('CMake', '3.23.1'),
+    ('binutils', '2.40'),
+    ('CMake', '3.27.6'),
 ]
 
 sanity_check_paths = {

Updated software `LibLZF-3.6-GCCcore-13.2.0.eb`

Diff against LibLZF-3.6-GCCcore-12.3.0.eb

easybuild/easyconfigs/l/LibLZF/LibLZF-3.6-GCCcore-12.3.0.eb

diff --git a/easybuild/easyconfigs/l/LibLZF/LibLZF-3.6-GCCcore-12.3.0.eb b/easybuild/easyconfigs/l/LibLZF/LibLZF-3.6-GCCcore-13.2.0.eb
index 500e967911..029c67711a 100644
--- a/easybuild/easyconfigs/l/LibLZF/LibLZF-3.6-GCCcore-12.3.0.eb
+++ b/easybuild/easyconfigs/l/LibLZF/LibLZF-3.6-GCCcore-13.2.0.eb
@@ -11,7 +11,7 @@ description = """LibLZF is a very small data compression library. It consists of
 and is very easy to incorporate into your own programs. The compression algorithm is very, very fast, yet still
 written in portable C."""
 
-toolchain = {'name': 'GCCcore', 'version': '12.3.0'}
+toolchain = {'name': 'GCCcore', 'version': '13.2.0'}
 
 source_urls = ['http://dist.schmorp.de/liblzf/Attic/']
 sources = ['liblzf-%(version)s.tar.gz']

Diff against LibLZF-3.6-GCCcore-11.3.0.eb

easybuild/easyconfigs/l/LibLZF/LibLZF-3.6-GCCcore-11.3.0.eb

diff --git a/easybuild/easyconfigs/l/LibLZF/LibLZF-3.6-GCCcore-11.3.0.eb b/easybuild/easyconfigs/l/LibLZF/LibLZF-3.6-GCCcore-13.2.0.eb
index f278878029..029c67711a 100644
--- a/easybuild/easyconfigs/l/LibLZF/LibLZF-3.6-GCCcore-11.3.0.eb
+++ b/easybuild/easyconfigs/l/LibLZF/LibLZF-3.6-GCCcore-13.2.0.eb
@@ -11,14 +11,14 @@ description = """LibLZF is a very small data compression library. It consists of
 and is very easy to incorporate into your own programs. The compression algorithm is very, very fast, yet still
 written in portable C."""
 
-toolchain = {'name': 'GCCcore', 'version': '11.3.0'}
+toolchain = {'name': 'GCCcore', 'version': '13.2.0'}
 
 source_urls = ['http://dist.schmorp.de/liblzf/Attic/']
 sources = ['liblzf-%(version)s.tar.gz']
 checksums = ['9c5de01f7b9ccae40c3f619d26a7abec9986c06c36d260c179cedd04b89fb46a']
 
 builddependencies = [
-    ('binutils', '2.38'),
+    ('binutils', '2.40'),
 ]
 
 sanity_check_commands = ['lzf -h']

Updated software `libavif-1.1.1-GCCcore-13.2.0.eb`

Diff against libavif-1.0.4-GCCcore-12.3.0.eb

easybuild/easyconfigs/l/libavif/libavif-1.0.4-GCCcore-12.3.0.eb

diff --git a/easybuild/easyconfigs/l/libavif/libavif-1.0.4-GCCcore-12.3.0.eb b/easybuild/easyconfigs/l/libavif/libavif-1.1.1-GCCcore-13.2.0.eb
index 149561be6b..38463d8530 100644
--- a/easybuild/easyconfigs/l/libavif/libavif-1.0.4-GCCcore-12.3.0.eb
+++ b/easybuild/easyconfigs/l/libavif/libavif-1.1.1-GCCcore-13.2.0.eb
@@ -4,26 +4,28 @@
 easyblock = 'CMakeMake'
 
 name = 'libavif'
-version = '1.0.4'
+version = '1.1.1'
 
 homepage = 'https://github.com/AOMediaCodec/libavif'
 description = """This library aims to be a friendly, portable C implementation of the AV1 Image File Format,
 as described here: https://aomediacodec.github.io/av1-avif/
 """
 
-toolchain = {'name': 'GCCcore', 'version': '12.3.0'}
+toolchain = {'name': 'GCCcore', 'version': '13.2.0'}
 
 source_urls = ['https://github.com/AOMediaCodec/libavif/archive/']
 sources = ['v%(version)s.tar.gz']
-checksums = ['dc56708c83a4b934a8af2b78f67f866ba2fb568605c7cf94312acf51ee57d146']
+checksums = ['914662e16245e062ed73f90112fbb4548241300843a7772d8d441bb6859de45b']
 
 builddependencies = [
-    ('CMake', '3.26.3'),
+    ('CMake', '3.27.6'),
     ('binutils', '2.40'),
     ('NASM', '2.16.01'),
-    ('Meson', '1.1.1'),
+    ('Meson', '1.2.3'),
     ('Ninja', '1.11.1'),
-    ('Rust', '1.70.0'),
+    ('Rust', '1.76.0'),
+    ('pkgconf', '2.0.3'),
+    ('libyuv', '20241125'),
 ]
 
 sanity_check_paths = {

Diff against libavif-0.11.1-GCCcore-10.3.0.eb

easybuild/easyconfigs/l/libavif/libavif-0.11.1-GCCcore-10.3.0.eb

diff --git a/easybuild/easyconfigs/l/libavif/libavif-0.11.1-GCCcore-10.3.0.eb b/easybuild/easyconfigs/l/libavif/libavif-1.1.1-GCCcore-13.2.0.eb
index 7ff457a545..38463d8530 100644
--- a/easybuild/easyconfigs/l/libavif/libavif-0.11.1-GCCcore-10.3.0.eb
+++ b/easybuild/easyconfigs/l/libavif/libavif-1.1.1-GCCcore-13.2.0.eb
@@ -1,29 +1,31 @@
 # This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild
-# Author: Denis Kristak
-# Update: Thomas Hoffmann (EMBL)
+# Author: Denis Kristak (Inuits)
+# Update: Thomas Hoffmann (EMBL), Denis Kristak (Inuits)
 easyblock = 'CMakeMake'
 
 name = 'libavif'
-version = '0.11.1'
+version = '1.1.1'
 
 homepage = 'https://github.com/AOMediaCodec/libavif'
 description = """This library aims to be a friendly, portable C implementation of the AV1 Image File Format,
 as described here: https://aomediacodec.github.io/av1-avif/
 """
 
-toolchain = {'name': 'GCCcore', 'version': '10.3.0'}
+toolchain = {'name': 'GCCcore', 'version': '13.2.0'}
 
 source_urls = ['https://github.com/AOMediaCodec/libavif/archive/']
 sources = ['v%(version)s.tar.gz']
-checksums = ['0eb49965562a0e5e5de58389650d434cff32af84c34185b6c9b7b2fccae06d4e']
+checksums = ['914662e16245e062ed73f90112fbb4548241300843a7772d8d441bb6859de45b']
 
 builddependencies = [
-    ('CMake', '3.20.1'),
-    ('binutils', '2.36.1'),
-    ('NASM', '2.15.05'),
-    ('Meson', '0.58.0'),
-    ('Ninja', '1.10.2'),
-    ('Rust', '1.52.1'),
+    ('CMake', '3.27.6'),
+    ('binutils', '2.40'),
+    ('NASM', '2.16.01'),
+    ('Meson', '1.2.3'),
+    ('Ninja', '1.11.1'),
+    ('Rust', '1.76.0'),
+    ('pkgconf', '2.0.3'),
+    ('libyuv', '20241125'),
 ]
 
 sanity_check_paths = {

Updated software `libde265-1.0.15-GCCcore-13.2.0.eb`

Diff against libde265-1.0.15-GCC-12.3.0.eb

easybuild/easyconfigs/l/libde265/libde265-1.0.15-GCC-12.3.0.eb

diff --git a/easybuild/easyconfigs/l/libde265/libde265-1.0.15-GCC-12.3.0.eb b/easybuild/easyconfigs/l/libde265/libde265-1.0.15-GCCcore-13.2.0.eb
index 9d6371e84b..d9cd9ccc66 100644
--- a/easybuild/easyconfigs/l/libde265/libde265-1.0.15-GCC-12.3.0.eb
+++ b/easybuild/easyconfigs/l/libde265/libde265-1.0.15-GCCcore-13.2.0.eb
@@ -8,14 +8,15 @@ version = '1.0.15'
 homepage = 'https://github.com/strukturag/libde265'
 description = "libde265 is an open source implementation of the h.265 video codec"
 
-toolchain = {'name': 'GCC', 'version': '12.3.0'}
+toolchain = {'name': 'GCCcore', 'version': '13.2.0'}
 
 source_urls = ['https://github.com/strukturag/libde265/releases/download/v%(version)s/']
 sources = [SOURCE_TAR_GZ]
 checksums = ['00251986c29d34d3af7117ed05874950c875dd9292d016be29d3b3762666511d']
 
 builddependencies = [
-    ('CMake', '3.26.3'),
+    ('binutils', '2.40'),
+    ('CMake', '3.27.6'),
 ]
 
 configopts = "-DENABLE_DECODER=ON -DENABLE_ENCODER=ON"

Diff against libde265-1.0.11-GCC-11.3.0.eb

easybuild/easyconfigs/l/libde265/libde265-1.0.11-GCC-11.3.0.eb

diff --git a/easybuild/easyconfigs/l/libde265/libde265-1.0.11-GCC-11.3.0.eb b/easybuild/easyconfigs/l/libde265/libde265-1.0.15-GCCcore-13.2.0.eb
index 7640cb6a54..d9cd9ccc66 100644
--- a/easybuild/easyconfigs/l/libde265/libde265-1.0.11-GCC-11.3.0.eb
+++ b/easybuild/easyconfigs/l/libde265/libde265-1.0.15-GCCcore-13.2.0.eb
@@ -3,19 +3,20 @@
 easyblock = 'CMakeMake'
 
 name = 'libde265'
-version = '1.0.11'
+version = '1.0.15'
 
 homepage = 'https://github.com/strukturag/libde265'
 description = "libde265 is an open source implementation of the h.265 video codec"
 
-toolchain = {'name': 'GCC', 'version': '11.3.0'}
+toolchain = {'name': 'GCCcore', 'version': '13.2.0'}
 
 source_urls = ['https://github.com/strukturag/libde265/releases/download/v%(version)s/']
 sources = [SOURCE_TAR_GZ]
-checksums = ['2f8f12cabbdb15e53532b7c1eb964d4e15d444db1be802505e6ac97a25035bab']
+checksums = ['00251986c29d34d3af7117ed05874950c875dd9292d016be29d3b3762666511d']
 
 builddependencies = [
-    ('CMake', '3.23.1'),
+    ('binutils', '2.40'),
+    ('CMake', '3.27.6'),
 ]
 
 configopts = "-DENABLE_DECODER=ON -DENABLE_ENCODER=ON"

Updated software `libheif-1.19.5-GCCcore-13.2.0.eb`

Diff against libheif-1.17.6-GCC-12.3.0.eb

easybuild/easyconfigs/l/libheif/libheif-1.17.6-GCC-12.3.0.eb

diff --git a/easybuild/easyconfigs/l/libheif/libheif-1.17.6-GCC-12.3.0.eb b/easybuild/easyconfigs/l/libheif/libheif-1.19.5-GCCcore-13.2.0.eb
index ee35510008..6bf423096b 100644
--- a/easybuild/easyconfigs/l/libheif/libheif-1.17.6-GCC-12.3.0.eb
+++ b/easybuild/easyconfigs/l/libheif/libheif-1.19.5-GCCcore-13.2.0.eb
@@ -3,24 +3,25 @@
 easyblock = 'CMakeMake'
 
 name = 'libheif'
-version = '1.17.6'
+version = '1.19.5'
 
 homepage = 'https://github.com/strukturag/libheif'
 description = "libheif is an HEIF and AVIF file format decoder and encoder"
 
-toolchain = {'name': 'GCC', 'version': '12.3.0'}
+toolchain = {'name': 'GCCcore', 'version': '13.2.0'}
 
 source_urls = ['https://github.com/strukturag/libheif/releases/download/v%(version)s/']
 sources = [SOURCE_TAR_GZ]
-checksums = ['8390baf4913eda0a183e132cec62b875fb2ef507ced5ddddc98dfd2f17780aee']
+checksums = ['d3cf0a76076115a070f9bc87cf5259b333a1f05806500045338798486d0afbaf']
 
 builddependencies = [
-    ('CMake', '3.26.3'),
+    ('binutils', '2.40'),
+    ('CMake', '3.27.6'),
 ]
 
 dependencies = [
-    ('libpng', '1.6.39'),
-    ('libjpeg-turbo', '2.1.5.1'),
+    ('libpng', '1.6.40'),
+    ('libjpeg-turbo', '3.0.1'),
     ('libde265', '1.0.15'),
     ('x265', '3.5'),
     ('Gdk-Pixbuf', '2.42.10'),

Diff against libheif-1.16.2-GCC-11.3.0.eb

easybuild/easyconfigs/l/libheif/libheif-1.16.2-GCC-11.3.0.eb

diff --git a/easybuild/easyconfigs/l/libheif/libheif-1.16.2-GCC-11.3.0.eb b/easybuild/easyconfigs/l/libheif/libheif-1.19.5-GCCcore-13.2.0.eb
index 9d966d5571..6bf423096b 100644
--- a/easybuild/easyconfigs/l/libheif/libheif-1.16.2-GCC-11.3.0.eb
+++ b/easybuild/easyconfigs/l/libheif/libheif-1.19.5-GCCcore-13.2.0.eb
@@ -3,27 +3,28 @@
 easyblock = 'CMakeMake'
 
 name = 'libheif'
-version = '1.16.2'
+version = '1.19.5'
 
 homepage = 'https://github.com/strukturag/libheif'
 description = "libheif is an HEIF and AVIF file format decoder and encoder"
 
-toolchain = {'name': 'GCC', 'version': '11.3.0'}
+toolchain = {'name': 'GCCcore', 'version': '13.2.0'}
 
 source_urls = ['https://github.com/strukturag/libheif/releases/download/v%(version)s/']
 sources = [SOURCE_TAR_GZ]
-checksums = ['7f97e4205c0bd9f9b8560536c8bd2e841d1c9a6d610401eb3eb87ed9cdfe78ea']
+checksums = ['d3cf0a76076115a070f9bc87cf5259b333a1f05806500045338798486d0afbaf']
 
 builddependencies = [
-    ('CMake', '3.23.1'),
+    ('binutils', '2.40'),
+    ('CMake', '3.27.6'),
 ]
 
 dependencies = [
-    ('libpng', '1.6.37'),
-    ('libjpeg-turbo', '2.1.3'),
-    ('libde265', '1.0.11'),
+    ('libpng', '1.6.40'),
+    ('libjpeg-turbo', '3.0.1'),
+    ('libde265', '1.0.15'),
     ('x265', '3.5'),
-    ('Gdk-Pixbuf', '2.42.8'),
+    ('Gdk-Pixbuf', '2.42.10'),
 ]
 
 # build both static and shared libraries

Updated software `Zopfli-1.0.3-GCCcore-13.2.0.eb`

Diff against Zopfli-1.0.3-GCCcore-12.3.0.eb

easybuild/easyconfigs/z/Zopfli/Zopfli-1.0.3-GCCcore-12.3.0.eb

diff --git a/easybuild/easyconfigs/z/Zopfli/Zopfli-1.0.3-GCCcore-12.3.0.eb b/easybuild/easyconfigs/z/Zopfli/Zopfli-1.0.3-GCCcore-13.2.0.eb
index 8b4417a9e3..29b3e948df 100644
--- a/easybuild/easyconfigs/z/Zopfli/Zopfli-1.0.3-GCCcore-12.3.0.eb
+++ b/easybuild/easyconfigs/z/Zopfli/Zopfli-1.0.3-GCCcore-13.2.0.eb
@@ -10,7 +10,7 @@ homepage = 'https://github.com/google/zopfli'
 description = """Zopfli Compression Algorithm is a compression library programmed in C to perform
 very good, but slow, deflate or zlib compression."""
 
-toolchain = {'name': 'GCCcore', 'version': '12.3.0'}
+toolchain = {'name': 'GCCcore', 'version': '13.2.0'}
 toolchainopts = {'pic': True}
 
 source_urls = ['https://github.com/google/zopfli/archive/refs/tags/']
@@ -18,7 +18,7 @@ sources = ['%(namelower)s-%(version)s.tar.gz']
 checksums = ['e955a7739f71af37ef3349c4fa141c648e8775bceb2195be07e86f8e638814bd']
 
 builddependencies = [
-    ('CMake', '3.26.3'),
+    ('CMake', '3.27.6'),
     ('binutils', '2.40'),
 ]

Diff against Zopfli-1.0.3-GCCcore-11.3.0.eb

easybuild/easyconfigs/z/Zopfli/Zopfli-1.0.3-GCCcore-11.3.0.eb

diff --git a/easybuild/easyconfigs/z/Zopfli/Zopfli-1.0.3-GCCcore-11.3.0.eb b/easybuild/easyconfigs/z/Zopfli/Zopfli-1.0.3-GCCcore-13.2.0.eb
index 4892a6729a..29b3e948df 100644
--- a/easybuild/easyconfigs/z/Zopfli/Zopfli-1.0.3-GCCcore-11.3.0.eb
+++ b/easybuild/easyconfigs/z/Zopfli/Zopfli-1.0.3-GCCcore-13.2.0.eb
@@ -10,7 +10,7 @@ homepage = 'https://github.com/google/zopfli'
 description = """Zopfli Compression Algorithm is a compression library programmed in C to perform
 very good, but slow, deflate or zlib compression."""
 
-toolchain = {'name': 'GCCcore', 'version': '11.3.0'}
+toolchain = {'name': 'GCCcore', 'version': '13.2.0'}
 toolchainopts = {'pic': True}
 
 source_urls = ['https://github.com/google/zopfli/archive/refs/tags/']
@@ -18,8 +18,8 @@ sources = ['%(namelower)s-%(version)s.tar.gz']
 checksums = ['e955a7739f71af37ef3349c4fa141c648e8775bceb2195be07e86f8e638814bd']
 
 builddependencies = [
-    ('CMake', '3.23.1'),
-    ('binutils', '2.38'),
+    ('CMake', '3.27.6'),
+    ('binutils', '2.40'),
 ]
 
 configopts = [

Updated software `zfp-1.0.1-GCCcore-13.2.0.eb`

Diff against zfp-1.0.1-GCCcore-12.3.0.eb

easybuild/easyconfigs/z/zfp/zfp-1.0.1-GCCcore-12.3.0.eb

diff --git a/easybuild/easyconfigs/z/zfp/zfp-1.0.1-GCCcore-12.3.0.eb b/easybuild/easyconfigs/z/zfp/zfp-1.0.1-GCCcore-13.2.0.eb
index 9471904658..ed80aaa531 100644
--- a/easybuild/easyconfigs/z/zfp/zfp-1.0.1-GCCcore-12.3.0.eb
+++ b/easybuild/easyconfigs/z/zfp/zfp-1.0.1-GCCcore-13.2.0.eb
@@ -12,7 +12,7 @@ zfp provides compressed-array classes that support high throughput read and writ
 elements. zfp also supports serial and parallel (OpenMP and CUDA) compression of whole arrays, e.g., for applications
 that read and write large data sets to and from disk."""
 
-toolchain = {'name': 'GCCcore', 'version': '12.3.0'}
+toolchain = {'name': 'GCCcore', 'version': '13.2.0'}
 toolchainopts = {'pic': True}
 
 source_urls = ['https://github.com/LLNL/zfp/archive']

Diff against zfp-1.0.0-GCCcore-11.3.0.eb

easybuild/easyconfigs/z/zfp/zfp-1.0.0-GCCcore-11.3.0.eb

diff --git a/easybuild/easyconfigs/z/zfp/zfp-1.0.0-GCCcore-11.3.0.eb b/easybuild/easyconfigs/z/zfp/zfp-1.0.1-GCCcore-13.2.0.eb
index c08bb6e10d..ed80aaa531 100644
--- a/easybuild/easyconfigs/z/zfp/zfp-1.0.0-GCCcore-11.3.0.eb
+++ b/easybuild/easyconfigs/z/zfp/zfp-1.0.1-GCCcore-13.2.0.eb
@@ -4,7 +4,7 @@
 easyblock = 'MakeCp'
 
 name = 'zfp'
-version = '1.0.0'
+version = '1.0.1'
 
 homepage = 'https://github.com/LLNL/zfp'
 description = """zfp is a compressed format for representing multidimensional floating-point and integer arrays.
@@ -12,15 +12,15 @@ zfp provides compressed-array classes that support high throughput read and writ
 elements. zfp also supports serial and parallel (OpenMP and CUDA) compression of whole arrays, e.g., for applications
 that read and write large data sets to and from disk."""
 
-toolchain = {'name': 'GCCcore', 'version': '11.3.0'}
+toolchain = {'name': 'GCCcore', 'version': '13.2.0'}
 toolchainopts = {'pic': True}
 
 source_urls = ['https://github.com/LLNL/zfp/archive']
 sources = ['%(version)s.tar.gz']
-checksums = ['fe13b03141ee9b571692aed42ff76cf37c9dcda40f9a43a808870dca3558a57c']
+checksums = ['4984db6a55bc919831966dd17ba5e47ca7ac58668f4fd278ebd98cd2200da66f']
 
 builddependencies = [
-    ('binutils', '2.38'),
+    ('binutils', '2.40'),
 ]
 
 prebuildopts = "sed -i 's/FLAGS = -O3/FLAGS = $CFLAGS/g' Makefile && "

pavelToman · 2024-11-28T16:01:34Z

@boegelbot please test @ generoso

boegelbot · 2024-11-28T16:05:09Z

@pavelToman: Request for testing this PR well received on login1

PR test command 'EB_PR=21929 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs /opt/software/slurm/bin/sbatch --job-name test_PR_21929 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

exit code: 0
output:

Submitted batch job 14777

Test results coming soon (I hope)...

- notification for comment with ID 2506429337 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2024-11-28T16:27:20Z

Test report by @boegelbot
SUCCESS
Build succeeded for 11 out of 11 (11 easyconfigs in total)
cns1 - Linux Rocky Linux 8.9, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/boegelbot/f116eb138a548480349bd51b3ebeacae for a full test report.

pavelToman · 2024-11-28T16:44:17Z

@boegelbot please test @ jsc-zen3

boegelbot · 2024-11-28T16:50:10Z

@pavelToman: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=21929 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_21929 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

exit code: 0
output:

Submitted batch job 5348

Test results coming soon (I hope)...

- notification for comment with ID 2506496686 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2024-11-28T17:05:00Z

Test report by @boegelbot
SUCCESS
Build succeeded for 12 out of 12 (11 easyconfigs in total)
jsczen3c1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.5, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.19
See https://gist.github.com/boegelbot/44c9702483b106d03e0f56a98a2a32c8 for a full test report.

pavelToman · 2024-12-02T13:44:59Z

Test report by @pavelToman
SUCCESS
Build succeeded for 11 out of 11 (11 easyconfigs in total)
node4007.donphan.os - Linux RHEL 8.8, x86_64, Intel(R) Xeon(R) Gold 6240 CPU @ 2.60GHz, 1 x NVIDIA NVIDIA A2, 545.23.08, Python 3.6.8
See https://gist.github.com/pavelToman/e1d7e33935962e612adc64671c41ee49 for a full test report.

github-actions bot added new update labels Nov 28, 2024

pavelToman mentioned this pull request Nov 29, 2024

{vis}[GCCcore/13.2.0,foss/2023b,gfbf/2023b] MONAI v1.4.0, PyAMG v5.2.1, zarr v2.18.3, ... #21937

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{lib}[GCCcore/13.2.0] imagecodecs v2024.6.1, CharLS v2.4.2, jxrlib v1.1, ... #21929

{lib}[GCCcore/13.2.0] imagecodecs v2024.6.1, CharLS v2.4.2, jxrlib v1.1, ... #21929

pavelToman commented Nov 28, 2024 •

edited

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{lib}[GCCcore/13.2.0] imagecodecs v2024.6.1, CharLS v2.4.2, jxrlib v1.1, ... #21929

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Updated software bitshuffle-0.5.2-foss-2023b.eb

Updated software CharLS-2.4.2-GCCcore-13.2.0.eb

Updated software imagecodecs-2024.6.1-foss-2023b.eb

Updated software jxrlib-1.1-GCCcore-13.2.0.eb

Updated software LibLZF-3.6-GCCcore-13.2.0.eb

Updated software libavif-1.1.1-GCCcore-13.2.0.eb

Updated software libde265-1.0.15-GCCcore-13.2.0.eb

Updated software libheif-1.19.5-GCCcore-13.2.0.eb

Updated software Zopfli-1.0.3-GCCcore-13.2.0.eb

Updated software zfp-1.0.1-GCCcore-13.2.0.eb

pavelToman commented Nov 28, 2024

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pavelToman commented Nov 28, 2024 •

edited

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Updated software `bitshuffle-0.5.2-foss-2023b.eb`

Updated software `CharLS-2.4.2-GCCcore-13.2.0.eb`

Updated software `imagecodecs-2024.6.1-foss-2023b.eb`

Updated software `jxrlib-1.1-GCCcore-13.2.0.eb`

Updated software `LibLZF-3.6-GCCcore-13.2.0.eb`

Updated software `libavif-1.1.1-GCCcore-13.2.0.eb`

Updated software `libde265-1.0.15-GCCcore-13.2.0.eb`

Updated software `libheif-1.19.5-GCCcore-13.2.0.eb`

Updated software `Zopfli-1.0.3-GCCcore-13.2.0.eb`

Updated software `zfp-1.0.1-GCCcore-13.2.0.eb`