Enhance GitHub Actions workflow: add system dependencies installation… #10

	name: Python Tests and Publish

	on:
	push:
	branches: [ main ]
	pull_request:
	branches: [ main ]
	release:
	types: [created]

	jobs:
	test:
	runs-on: self-hosted
	strategy:
	matrix:
	python-version: [3.7, 3.8, 3.9]

	steps:
	- uses: actions/checkout@v2

	- name: Set up Python ${{ matrix.python-version }}
	uses: actions/setup-python@v2
	with:
	python-version: ${{ matrix.python-version }}

	- name: Install system dependencies
	run: \|
	sudo apt-get update
	sudo apt-get install -y build-essential gcc gfortran pkg-config cmake libopenblas-dev liblapack-dev

	- name: Install Python dependencies
	run: \|
	python -m pip install --upgrade pip
	pip install --upgrade setuptools wheel
	pip install -r requirements.txt

	- name: Install test dependencies
	run: \|
	pip install pytest pytest-cov

	- name: Run tests
	run: \|
	pytest tests/ --cov=src/ --cov-report=xml

	- name: Upload coverage report
	uses: codecov/codecov-action@v1
	with:
	file: ./coverage.xml
	flags: unittests
	name: codecov-umbrella
	fail_ci_if_error: false

	publish:
	needs: test
	runs-on: ubuntu-latest
	if: github.event_name == 'release' && github.event.action == 'created'

	steps:
	- uses: actions/checkout@v2
	- name: Set up Python
	uses: actions/setup-python@v2
	with:
	python-version: '3.9'

	- name: Install dependencies
	run: \|
	python -m pip install --upgrade pip
	pip install setuptools wheel twine

	- name: Build and publish
	env:
	TWINE_USERNAME: ${{ secrets.PYPI_USERNAME }}
	TWINE_PASSWORD: ${{ secrets.PYPI_PASSWORD }}
	run: \|
	python setup.py sdist bdist_wheel
	twine upload dist/*

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