Unit tests #1106
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| name: "Unit tests" | |
| on: | |
| pull_request: | |
| branches: | |
| - master | |
| - stable | |
| push: | |
| branches: | |
| - master | |
| tags: | |
| - "v*" | |
| schedule: | |
| - cron: "20 5 * * *" | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| jobs: | |
| test_suite: | |
| runs-on: ${{ matrix.OS }}-latest | |
| name: "Unit Tests" | |
| strategy: | |
| matrix: | |
| CONDA_PY: | |
| - 3.9 | |
| - 3.8 | |
| - 3.7 | |
| OS: ["ubuntu"] | |
| MDTRAJ: ["mdtraj-release"] | |
| INSTALL_WITH: ["pip"] | |
| include: | |
| - CONDA_PY: 3.9 | |
| OS: "ubuntu" | |
| MDTRAJ: "mdtraj-dev" | |
| INSTALL_WITH: "pip" | |
| - CONDA_PY: 3.9 | |
| OS: "windows" | |
| MDTRAJ: "mdtraj-release" | |
| INSTALL_WITH: "conda" | |
| - CONDA_PY: 3.7 | |
| OS: "windows" | |
| MDTRAJ: "mdtraj-release" | |
| INSTALL_WITH: "conda" | |
| steps: | |
| - uses: actions/checkout@v2 | |
| with: | |
| fetch-depth: 2 | |
| - uses: actions/setup-python@v2 | |
| - uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| auto-update-conda: true | |
| python-version: ${{ matrix.CONDA_PY }} | |
| - name: "Create requirements files" | |
| run: python ci/extract_requirements.py | |
| - name: "Install dependencies" | |
| env: | |
| INSTALL_WITH: ${{ matrix.INSTALL_WITH }} | |
| run: | | |
| # this trick only works as long as PyPI & conda-forge use same | |
| # package names | |
| if [ "$INSTALL_WITH" = "pip" ]; then | |
| source ci/pip-pre-install.sh | |
| INSTALLER_FLAGS="-U -r" | |
| elif [ "$INSTALL_WITH" = "conda" ]; then | |
| INSTALLER_FLAGS="-c conda-forge --file" | |
| else | |
| echo "Bad value for INSTALL_WITH: $INSTALL_WITH" | |
| exit 1 | |
| fi | |
| $INSTALL_WITH install $INSTALLER_FLAGS requirements.txt | |
| # have to pip-install testing until autorelease on conda | |
| pip install -U -r extras_test.txt | |
| - name: "Install MDTraj development version (pip)" | |
| if: ${{ matrix.MDTRAJ == 'mdtraj-dev' }} | |
| run: pip install --upgrade --force-reinstall -r ci/mdtraj_dev.txt | |
| - name: "Install optional extras (pip)" | |
| # we only use this with pip, but in principle it could be converted | |
| # to something that also uses conda | |
| if: ${{ matrix.MDTRAJ == 'mdtraj-dev' }} | |
| run: pip install -r extras_all.txt | |
| - name: "Install contact_map" | |
| run: pip install -e . | |
| - name: "Versions" | |
| env: | |
| INSTALL_WITH: ${{ matrix.INSTALL_WITH }} | |
| run: | | |
| $INSTALL_WITH list | |
| - name: "Autorelease check" | |
| run: python autorelease_check.py | |
| - name: "Tests" | |
| env: | |
| PY_COLORS: "1" | |
| run: | | |
| python -c "import contact_map" | |
| py.test -vv --cov=contact_map --cov-report xml | |
| - uses: codecov/codecov-action@v2 | |
| if: ${{ github.event != 'schedule' }} |