update readme

scripts/README.md

@@ -5,24 +5,25 @@
 
 Utility script to generate fingerprints for a set of smiles strings. By precomputing the fingerprints for all the fragments in our dataset, we can speed up training.
 
-To use, pass in the `fragments.h5` file created by the `process_pdbbind.py` script and specify the fingerprint type and output path.
+To use, pass in the `moad.h5` file and specify the fingerprint type and output path.
 
 Supported fingerprints:
 - `rdk`: RDKFingerprint (2048 bits)
+- `rdk10`: RDKFingerprint (path size 10) (2048 bits)
 - `morgan`: Mogan fingerprint (r=2) (2048 bits)
 - `gobbi2d`: Gobbi 2d pharmophocore fingerprint (folded to 2048 bits)
 
 Usage:
 
 ```
-usage: make_fingerprints.py [-h] -f FRAGMENTS -fp {rdk,morgan,gobbi2d}
+usage: make_fingerprints.py [-h] -f FRAGMENTS -fp {rdk,rdk10,morgan,gobbi2d}
                             [-o OUTPUT]
 
 optional arguments:
   -h, --help            show this help message and exit
   -f FRAGMENTS, --fragments FRAGMENTS
                         Path to fragemnts.h5 containing "frag_smiles" array
-  -fp {rdk,morgan,gobbi2d}, --fingerprint {rdk,morgan,gobbi2d}
+  -fp {rdk,rdk10,morgan,gobbi2d}, --fingerprint {rdk,rdk10,morgan,gobbi2d}
                         Which fingerprint type to generate
   -o OUTPUT, --output OUTPUT
                         Output file path (.h5)