Add example SLURM processing files

examples/cdindex/cdindex-multi.slurm

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+#!/bin/bash
+
+#SBATCH --job-name=cdindex-multi
+#SBATCH --output=cdindex-multi.out
+#SBATCH --error=cdindex-multi.err
+#SBATCH --nodes=1
+#SBATCH --ntasks=1
+#SBATCH --cpus-per-task=40
+#SBATCH --mem=256G
+#SBATCH --time=40:00:00
+#SBATCH --partition=fat
+#SBATCH --account=pa240702
+
+# Calculate the CD index up to 2023
+
+set -eu
+
+# On ARIS cdindex-db can be compiled as follows:
+# module load intel/18
+# module load gnu/13
+# SQLITE_DIR=$HOME/src/sqlite-amalgamation-3460000/ make cdindex-db
+
+# /tmp is 2GB; redirect it here for 64GB
+export TMP=$(mktemp -d /dev/shm/csmake.XXXXXX)
+export TMPDIR="$TMP"
+
+time ./cdindex-db cdindex.db rolap.db
+
+rm -rf "$TMP"

examples/cdindex/compress.slurm

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+#!/bin/bash
+
+#SBATCH --job-name=cdindex-compress
+#SBATCH --output=cdindex-compress.out
+#SBATCH --error=cdindex-compress.err
+#SBATCH --nodes=1
+#SBATCH --ntasks=1
+#SBATCH --cpus-per-task=8
+#SBATCH --mem=16G
+#SBATCH --time=40:00:00
+#SBATCH --partition=compute
+#SBATCH --account=pa240702
+
+# Compress the reports
+
+set -eu
+
+cd reports
+xz --threads=8 --keep --verbose cd5index-all.txt

examples/cdindex/make.slurm

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+#!/bin/bash
+
+#SBATCH --job-name=cdindex-make
+#SBATCH --output=cdindex-make.out
+#SBATCH --error=cdindex-make.err
+#SBATCH --nodes=1
+#SBATCH --ntasks=1
+#SBATCH --cpus-per-task=2
+#SBATCH --mem=16G
+#SBATCH --time=40:00:00
+#SBATCH --partition=compute
+#SBATCH --account=pa240702
+
+# Run make to compute the yearly cdindex
+
+set -eu
+
+# On ARIS cdindex-db can be compiled as follows:
+# module load intel/18
+# module load gnu/13
+# SQLITE_DIR=$HOME/src/sqlite-amalgamation-3460000/ make cdindex-db
+
+# /tmp is 2GB; redirect it here for 64GB
+export TMP=$(mktemp -d /dev/shm/csmake.XXXXXX)
+export TMPDIR="$TMP"
+
+time make
+
+rm -rf "$TMP"