Add PubMed fetching rule #169
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| name: Alexandria3k CI | |
| on: | |
| push: | |
| pull_request: | |
| workflow_dispatch: | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: ["3.7", "3.8", "3.9", "3.10", "3.11"] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install pipenv==2023.7.23 | |
| cd src && pipenv install --dev | |
| - name: Run unit and integration tests | |
| run: cd src && pipenv run python -m unittest discover -s .. | |
| - name: Check code formatting | |
| run: | | |
| cd src | |
| find . -name '*.py' | xargs pipenv run black -l 79 --check | |
| - name: Lint | |
| run: | | |
| cd src | |
| if [ $PYTHON_VER == 3.11 ] ; then find . -name '*.py' | xargs pipenv run python -m pylint --rcfile ../.pylintrc ; fi | |
| env: | |
| PYTHON_VER: ${{ matrix.python-version }} | |
| - name: Install SQLite | |
| run: | | |
| sudo apt-get install -y sqlite | |
| - name: Run SQL unit tests | |
| run: | | |
| for t in tests/*.rdbu; do rdbunit --database=sqlite $t | sqlite3 ; done | |
| - name: Build package | |
| run: cd src && pipenv run python -m build .. | |
| - name: Create virtual environment for installation | |
| run: | | |
| pip install virtualenv | |
| python -m venv test-a3k | |
| - name: Install built package | |
| run: | | |
| cd test-a3k | |
| . bin/activate | |
| python3 -m pip install --use-pep517 ../dist/alexandria3k-*.whl | |
| - name: Run built package | |
| run: | | |
| cd test-a3k | |
| . bin/activate | |
| # As Python module | |
| python -m alexandria3k --version | |
| # As a command | |
| bin/a3k --version | |
| - name: Test provided examples | |
| run: | | |
| cd test-a3k | |
| . bin/activate | |
| cd ../examples | |
| make clean all |