Merge pull request #632 from heerden/master

Full automation for Rt model 2 results

.github/workflows/realtime_rt_action.yaml

@@ -2,15 +2,11 @@
 # Do not modify this action before discussing
 
 # If you have an analysis notebook or script that can export data, chat to @heerden and @vukosim
-# Every analysis has unique triggers so a new Github Action might be required
 
 on:
-  #push
   push:
     branches:
       - master
-    #tags:
-    #  - dailyfinal
     paths:
       - data/covid19za_provincial_cumulative_timeline_confirmed.csv
 
@@ -45,22 +41,6 @@ jobs:
         isReport: False
         poll: True
 
-    - name: Calc Debug
-      run: |
-        cd data/calc
-        ls
-
-    # Note: some actions runs are skipped with this recipe, trying git-auto-commit-action
-    #- name: Commit csv Changes
-    #  uses: EndBug/add-and-commit@v4
-    #  with:
-    #    author_name: "Schalk van Heerden"
-    #    author_email: [email protected]
-    #    message: "Rt action run"
-    #    #'calculated_r0_sa_provincial_cumulative.csv'
-    #    add: "data/calc/"
-    #  env:
-    #    GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
     - uses: stefanzweifel/git-auto-commit-action@v4
       with:
         # Required
@@ -78,4 +58,5 @@ jobs:
         # Action will create and push a new tag to the remote repository and the defined branch
         #tagging_message: 'v1.0.0'
         # Optional options appended to `git-push`
-        #push_options: '--force'
+        #push_options: '--force'
+        commit_author: github-actions <[email protected]>

.github/workflows/rtlive-model-za.yml

@@ -0,0 +1,50 @@
+# This workflow was created by @heerden
+# Do not modify this action before discussing
+
+# If you have an analysis notebook or script that can export data, chat to @heerden and @vukosim
+
+on:
+  push:
+    branches:
+      - master
+    paths:
+      - data/covid19za_provincial_cumulative_timeline_confirmed.csv
+
+jobs:
+  run:
+    runs-on: ubuntu-latest
+    steps:
+    - uses: actions/checkout@v2
+
+    - name: Setup Python
+      uses: actions/setup-python@v1
+
+    - name: Setup Python Dependencies
+      run: |
+        python -m pip install --upgrade pip
+        pip install -r notebooks/covid-model/requirements.txt 
+
+    - name: Run Python Script
+      run: |
+        cd notebooks/covid-model
+        python rtlive-model-za.py
+
+    - uses: stefanzweifel/git-auto-commit-action@v4
+      with:
+        # Required
+        commit_message: Rt model 2 action run
+        # Optional branch to push to, defaults to the current branch
+        #branch: master
+        # Optional options appended to `git-commit`
+        #commit_options: '--no-verify --signoff'
+        # Optional glob pattern of files which should be added to the commit
+        file_pattern: data/calc/*.csv
+        # Optional local file path to the repository
+        #repository: .
+        # Optional commit user and author settings
+        # Optional tag message
+        # Action will create and push a new tag to the remote repository and the defined branch
+        #tagging_message: 'v1.0.0'
+        # Optional options appended to `git-push`
+        #push_options: '--force'
+        commit_author: github-actions <[email protected]>