Gapfill update #66
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Gapfill update #66
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…gapfill-update to get the `databases` update
Added function load_a_table_from_database to the io module to get a table from the database via the table name.
Added function replace_reaction_direction_with_fluxes to analysis_biocyc to add a flux dictionary to the reactions end result table. Added function get_reversible to entities to obtain the reversibility of a reaction from the flux bounds.
Added function gapfill_model does currently not work. Added function gapfill which will get the missing genes, metabolites and reactions and adds these to the provided model. Added more comments.
…gapfill-update Update branch gapfill
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Merging
gapfillintodevis required to get the new function used to get a table as pandas data frame from the overall databasedata.db.