Adjusted deprecation warnings in curate.py for docs #120 #121

draeger-lab · Jul 15, 2024 · 9c9717d · 9c9717d
1 parent 721b416
commit 9c9717d
Showing 1 changed file with 6 additions and 2 deletions.
diff --git a/src/refinegems/curation/curate.py b/src/refinegems/curation/curate.py
@@ -40,7 +40,9 @@
 def add_reactions_from_table(model: libModel, table: pd.DataFrame, email: str) -> libModel:
     """Wrapper function to use with table format given in data/manual_curation.xlsx, sheet gapfill: Adds all reactions with their info given in the table to the given model
 
-    **Deprecation warning**: will be deprecated in a future update.
+    .. warning::
+        .. deprecated:: 2.0.0
+           Use :py:func:`~refinegems.curation.gapfill.gapfill_model` instead.
 
     Args:
         - model (libModel): 
@@ -88,7 +90,9 @@ def add_reactions_from_table(model: libModel, table: pd.DataFrame, email: str) -
 def update_annotations_from_table(model: libModel, table: pd.DataFrame) -> libModel:
     """Wrapper function to use with table format given in data/manual_curation.xlsx, sheet metabs: Updates annotation of metabolites given in the table
 
-    **Deprecation warning**: will be deprecated in a future update.
+    .. warning::
+        .. deprecated:: 2.0.0
+           Use :py:func:`~refinegems.curation.gapfill.gapfill_model` instead if you want to add completely new content.
 
     Args:
         - model (libModel):