CUDA stream optimisation #89
Workflow file for this run
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| name: Uni-Dock CI/CD | |
| on: | |
| push: | |
| branches: [ main ] | |
| pull_request: | |
| branches: [ main ] | |
| jobs: | |
| unidock_test: | |
| runs-on: nvidia | |
| container: | |
| image: nvidia/cuda:12.2.0-devel-ubuntu22.04 | |
| options: --gpus all | |
| steps: | |
| - name: checkout repo | |
| uses: actions/checkout@v3 | |
| - name: install basic packages | |
| run: | | |
| apt-get update | |
| apt-get install -y build-essential cmake libboost-all-dev ninja-build | |
| - if: ${{ env.ACT }} | |
| name: Hack container for local development | |
| run: | | |
| apt-get install -y curl sudo | |
| curl -fsSL https://deb.nodesource.com/setup_18.x | bash - | |
| sudo apt-get install -y nodejs | |
| - name: build | |
| run: | | |
| cd unidock | |
| mkdir build | |
| cd build | |
| cmake .. -G Ninja -DCMAKE_BUILD_TYPE=Release | |
| cmake --build . | |
| cmake --install . | |
| cd ../.. | |
| - name: validation | |
| run: | | |
| nvidia-smi | |
| unidock --version | |
| - name: Set up Python 3.8 | |
| uses: actions/setup-python@v3 | |
| with: | |
| python-version: 3.8 | |
| - name: perform unit-test | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install pytest coverage | |
| coverage run -m pytest unidock/test/ut -v | |
| coverage xml | |
| build_docker_image: | |
| needs: unidock_test | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: log in to docker hub | |
| uses: docker/login-action@v2 | |
| with: | |
| username: dptechnology | |
| password: ${{ secrets.DOCKERHUB_PAT }} | |
| - name: set up QEMU | |
| uses: docker/setup-qemu-action@v2 | |
| - name: set up docker buildx | |
| id: buildx | |
| uses: docker/setup-buildx-action@v2 | |
| - uses: benjlevesque/[email protected] | |
| id: short-sha | |
| with: | |
| length: 7 | |
| - name: check commit short sha | |
| run: echo ${{ steps.short-sha.outputs.sha }} | |
| - name: build and push container | |
| uses: docker/build-push-action@v4 | |
| with: | |
| tags: dptechnology/unidock:${{ steps.short-sha.outputs.sha }},dptechnology/unidock:latest | |
| file: Dockerfile | |
| context: "{{defaultContext}}:unidock" | |
| push: true |