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Re-implement journal reader as a class with inheritance #40

Re-implement journal reader as a class with inheritance

Re-implement journal reader as a class with inheritance #40

name: mathrace-interaction CI
on:
push:
branches:
- "**"
pull_request:
branches:
- main
schedule:
- cron: "0 0 * * MON"
workflow_dispatch:
inputs:
full_integration_tests:
description: "If yes, run integration tests with --all-journals. Default value is no"
jobs:
test:
runs-on: ubuntu-latest
strategy:
matrix:
include:
- name: without-turing
setup_container: ""
- name: with-turing
setup_container: |
export DEBIAN_FRONTEND="noninteractive"
export DJANGO_SECRET_KEY="github-actions"
export POSTGRES_PASSWORD="github-actions"
echo "#!/bin/bash" > docker/dockerfile.sh
echo "set -e" >> docker/dockerfile.sh
dkr2sh/dkr2sh.sed < docker/Dockerfile >> docker/dockerfile.sh
sed -i "s/rsync/echo rsync/g" docker/dockerfile.sh
sed -i "s/passwd/echo passwd/g" docker/dockerfile.sh
sed -i "s|/root|${PWD}|g" docker/dockerfile.sh
sed -i "s|/root|${PWD}|g" docker/entrypoint.sh
chmod +x docker/dockerfile.sh
docker/dockerfile.sh
sh -c "echo \"${POSTGRES_PASSWORD}\n${POSTGRES_PASSWORD}\" | passwd postgres"
docker/entrypoint.sh echo "Disabling server startup"
fail-fast: false
container: debian:12
name: test (${{ matrix.name }})
defaults:
run:
working-directory: mathrace_interaction
steps:
- name: Install git
run: |
export DEBIAN_FRONTEND="noninteractive"
apt update -y -q
apt install -y -qq git
working-directory: .
- uses: actions/checkout@v4
with:
submodules: true
- name: Setup container
run: ${{ matrix.setup_container }}
working-directory: .
- name: Install non-pip dependencies of mathrace-interaction
run: |
export DEBIAN_FRONTEND="noninteractive"
apt install -y -qq python3-pip
rm /usr/lib/python3.*/EXTERNALLY-MANAGED
- name: Install mathrace-interaction
run: |
python3 -m pip install .[docs,lint,tests]
- name: Clean build files
run: |
git config --global --add safe.directory $PWD
git clean -xdf
working-directory: .
- name: Run ruff
run: |
python3 -m ruff .
- name: Run isort
run: |
python3 -m isort --check --diff .
- name: Run mypy
run: |
python3 -m mypy --exclude=conftest.py .
python3 -m mypy tests/integration/conftest.py
python3 -m mypy tests/unit/conftest.py
- name: Run yamllint
run: |
python3 -m yamllint -d "{ignore: turing, extends: default, rules: {document-start: {present: false}, line-length: disable, truthy: {check-keys: false}}}" ../.github
- name: Run documentation generation
run: |
cd docs && python3 -m sphinx -W -b html . build/html
- name: Run unit tests
run: |
COVERAGE_FILE=.coverage_unit python3 -m coverage run --source=mathrace_interaction -m pytest tests/unit
- name: Determine integration tests options
id: determine_integration_tests_options
run: |
WITH_INTEGRATION_TESTS=yes
FULL_INTEGRATION_TESTS=${{ inputs.full_integration_tests }}
if [ "${{ github.event_name }}" == "schedule" ]; then
FULL_INTEGRATION_TESTS=yes
fi
if [ "${{ matrix.name }}" != "with-turing" ]; then
WITH_INTEGRATION_TESTS=no
FULL_INTEGRATION_TESTS=no
fi
if [ "${FULL_INTEGRATION_TESTS}" != "yes" ] && [ "${FULL_INTEGRATION_TESTS}" != "no" ]; then
FULL_INTEGRATION_TESTS=no
fi
echo "with_integration_tests=${WITH_INTEGRATION_TESTS}" >> ${GITHUB_OUTPUT}
echo "full_integration_tests=${FULL_INTEGRATION_TESTS}" >> ${GITHUB_OUTPUT}
- name: Run integration tests (basic)
if: steps.determine_integration_tests_options.outputs.with_integration_tests == 'yes' && steps.determine_integration_tests_options.outputs.full_integration_tests != 'yes'
run: |
COVERAGE_FILE=.coverage_integration python3 -m coverage run --source=mathrace_interaction -m pytest tests/integration
- name: Run integration tests (full)
if: steps.determine_integration_tests_options.outputs.with_integration_tests == 'yes' && steps.determine_integration_tests_options.outputs.full_integration_tests == 'yes'
run: |
COVERAGE_FILE=.coverage_integration python3 -m coverage run --source=mathrace_interaction -m pytest --all-journals tests/integration
- name: Combine coverage reports
if: steps.determine_integration_tests_options.outputs.with_integration_tests == 'yes'
run: |
python3 -m coverage combine .coverage*
python3 -m coverage report --fail-under=100 --show-missing --skip-covered
warn:
runs-on: ubuntu-latest
if: github.repository == 'dmf-unicatt/turing-dmf' && github.ref == 'refs/heads/main' && github.event_name == 'schedule'
steps:
- name: Warn if scheduled workflow is about to be disabled
uses: fem-on-colab/warn-workflow-about-to-be-disabled-action@main
with:
workflow-filename: mathrace_interaction_ci.yml
days-elapsed: 50