Skip to content

Issues: dkoslicki/CMash

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

14 Open 17 Closed
14 Open 17 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Is CMash metric?
#32 opened Jun 8, 2023 by jianshu93
4
Add KMC as requirement
#31 opened Apr 17, 2020 by dkoslicki
@dkoslicki
For very large databases, creation of TST is slow and memory intensive enhancement priority
#29 opened Mar 24, 2020 by dkoslicki
3 tasks done
@dkoslicki
6
Gzipping all training files results in a nice reduction: add feature that allows scripts/modules to handle this enhancement good first issue
#28 opened Mar 23, 2020 by dkoslicki
2 tasks
In MakeStreamingDNADatabase.py, don't require output directory to exist good first issue
#27 opened Mar 20, 2020 by dkoslicki
Create script to demonstrate how to re-train CMash
#26 opened Mar 20, 2020 by dkoslicki
1 of 3 tasks
In post-processing, find correct denominator
#23 opened Mar 18, 2020 by dkoslicki
@dkoslicki
Test k-mer frequency distribution idea
#21 opened Feb 6, 2020 by dkoslicki
4 of 6 tasks
@x-zang
2
Multiple k-mer sizes confirmation and testing priority
#20 opened Feb 6, 2020 by dkoslicki
2 of 6 tasks
@ShaopengLiu1
2
Restructure repo so it's clear which approach is using the streaming, and which is using Bloom filters good first issue
#18 opened Feb 6, 2020 by dkoslicki
Update PyPi release of CMash
#17 opened Feb 6, 2020 by dkoslicki
@dkoslicki
Make a Conda/bioconda release of CMash good first issue
#16 opened Feb 6, 2020 by dkoslicki
1
3
Improved classification time with KMC enhancement good first issue
#15 opened Feb 6, 2020 by dkoslicki
@IsaacT1123
16
Testing environment good first issue
#14 opened Feb 6, 2020 by dkoslicki
3 of 7 tasks
@dkoslicki @ShaopengLiu1
@IsaacT1123 @x-zang
9
ProTip! no:milestone will show everything without a milestone.