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1. nanoGPT-DNA nanoGPT-DNA Public

   A minimal GPT-like large language model (LLM) for DNA sequences inspired by nanoGPT. nanoGPT-DNA trains a transformer model on DNA using PyTorch to explore regulatory syntax and uncover biological …

   Python

2. HLCA-scAtlas-Exploration HLCA-scAtlas-Exploration Public

   Implemented the integration of the Human Lung Cell Atlas (HLCA) core dataset, combining 13 studies with ~600,000 cells, using Scanpy, Polars, and scVI-tools to evaluate and compare results with the…

   Jupyter Notebook 1

3. EGFR-pLM-Pathogenicity EGFR-pLM-Pathogenicity Public

   Structural and functional analysis of EGFR mutations and their impact on antibody resistance. Using ESM1b, a protein language model (pLM), for variant effect prediction, the project evaluates patie…

   Jupyter Notebook

4. AutismSketchClassifier AutismSketchClassifier Public

   This project trains a ResNet18 from scratch using TensorFlow on 50 million images from the QuickDraw dataset. The final layer embeddings are used to build a KNN classifier for autism sketches.

   Jupyter Notebook 2 1

5. HeartDiseaseMLInterpretation HeartDiseaseMLInterpretation Public

   Heart disease prediction model using XGBoost, with hyperparameter tuning, model evaluation, and interpretability through SHAP.

   Python 1

6. CV CV Public

   This repository contains my CV, highlighting my academic background and research in bioinformatics, genomics, and the application of machine learning.

   TeX